Package: r3Cseq
Version: 1.56.0
Title: Analysis of Chromosome Conformation Capture and Next-generation
        Sequencing (3C-seq)
Author: Supat Thongjuea, MRC WIMM Centre for Computational Biology,
        Weatherall Institute of Molecular Medicine, University of
        Oxford, UK <supat.thongjuea@imm.ox.ac.uk>
Maintainer: Supat Thongjuea <supat.thongjuea@imm.ox.ac.uk> or
 <supat.thongjuea@gmail.com>
Depends: GenomicRanges, Rsamtools, rtracklayer, VGAM, qvalue
Imports: methods, Seqinfo, IRanges, Biostrings, data.table, sqldf,
        RColorBrewer
Suggests: BSgenome.Mmusculus.UCSC.mm9.masked,
        BSgenome.Mmusculus.UCSC.mm10.masked,
        BSgenome.Hsapiens.UCSC.hg18.masked,
        BSgenome.Hsapiens.UCSC.hg19.masked,
        BSgenome.Rnorvegicus.UCSC.rn5.masked
Description: This package is used for the analysis of long-range
        chromatin interactions from 3C-seq assay.
License: GPL-3
URL: http://r3cseq.genereg.net,https://github.com/supatt-lab/r3Cseq/
Collate: AllClasses.R AllGenerics.R Export.R FunctionInCommon.R
        FunctionsForBatchAnalysis.R RestrictionEnzymeFunctions.R
        FunctionsForNoReplicationAnalysis.R Report.R Visualize3Cseq.R
        Annotation.R
biocViews: Preprocessing, Sequencing
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:09:24 UTC
RemoteUrl: https://github.com/bioc/r3Cseq
RemoteRef: RELEASE_3_22
RemoteSha: 4184f01541c720cf5c80026bef6e7f007d3cc1d6
NeedsCompilation: no
Packaged: 2026-01-30 21:00:06 UTC; root
Built: R 4.5.2; ; 2026-01-30 21:07:38 UTC; windows
