Package: qvalue
Type: Package
Title: Q-value estimation for false discovery rate control
Version: 2.42.0
Date: 2015-03-24
Authors@R: as.person(c(
    "John D. Storey <jdstorey@princeton.edu> [aut, cre]", 
    "Andrew J. Bass <ajbass@emory.edu> [aut]", 
    "Alan Dabney [aut]",
    "David Robinson [aut]",
    "Gregory Warnes [ctb]"
  ))
Maintainer: John D. Storey <jstorey@princeton.edu>, Andrew J. Bass
 <ajbass@emory.edu>
biocViews: MultipleComparisons
Description: This package takes a list of p-values resulting from the
        simultaneous testing of many hypotheses and estimates their
        q-values and local FDR values. The q-value of a test measures
        the proportion of false positives incurred (called the false
        discovery rate) when that particular test is called
        significant. The local FDR measures the posterior probability
        the null hypothesis is true given the test's p-value. Various
        plots are automatically generated, allowing one to make
        sensible significance cut-offs. Several mathematical results
        have recently been shown on the conservative accuracy of the
        estimated q-values from this software. The software can be
        applied to problems in genomics, brain imaging, astrophysics,
        and data mining.
VignetteBuilder: knitr
Imports: splines, ggplot2, grid, reshape2
Suggests: knitr
Depends: R(>= 2.10)
URL: http://github.com/jdstorey/qvalue
License: LGPL
RoxygenNote: 5.0.1
Config/pak/sysreqs: libicu-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 13:54:23 UTC
RemoteUrl: https://github.com/bioc/qvalue
RemoteRef: RELEASE_3_22
RemoteSha: 6527d7b61a5d569b89267d662c41b1202b238928
NeedsCompilation: no
Packaged: 2026-01-28 07:04:37 UTC; root
Author: John D. Storey [aut, cre],
  Andrew J. Bass [aut],
  Alan Dabney [aut],
  David Robinson [aut],
  Gregory Warnes [ctb]
Built: R 4.5.2; ; 2026-01-28 07:05:46 UTC; windows
