12b717d0ff9ee1334c4d95bfb46791c4 *DESCRIPTION
7b87d02f9ff8b0cc1df84964c190fd22 *INDEX
f8e2f4cfdc6332d15a4a18bf7d393505 *Meta/Rd.rds
7c8781f9487856cf1de67a3bad55ccd0 *Meta/data.rds
86d0636b4c700e416386835098fcba6f *Meta/features.rds
eb9dd79e6845340e1a4bf7e32d162989 *Meta/hsearch.rds
1b6978cfb538ed39b9536f95e3ba3ee0 *Meta/links.rds
db33b23735f907ae1ca329ae6f452e33 *Meta/nsInfo.rds
011f3c6faa4623433660fd0050813827 *Meta/package.rds
858931895991baa44cf53997a8d6ea43 *Meta/vignette.rds
8ce8123007c8467c359323a3a3b35ca2 *NAMESPACE
7204efa0a7af79d7e5bc0c2df94afcab *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/pathwayPCA
3c253bf6555c211abac25e1bd449f8f2 *R/pathwayPCA.rdb
8d238ef0dc8ea159d44f433c2a75267b *R/pathwayPCA.rdx
f33eb7e4453e8ceb730eba1275639fca *data/colonSurv_df.rda
7e5d959e883cb932a78bae6bb0633868 *data/colon_pathwayCollection.rda
831054a0ac8c82c04586fd73e38fb50f *data/datalist
b2df0886cdd6b6eb43d6e8c03013b9c9 *data/wikipwsHS_Entrez_pathwayCollection.rda
e98c53533bf9e59e3c11f7eb1348ecba *data/wikipwsHS_Symbol_pathwayCollection.rda
3cfb30b97f46a79d0a3bfaf885ccc120 *doc/Introduction_to_pathwayPCA.R
d053df02b0ca951eaf2a2525f1b6e9e1 *doc/Introduction_to_pathwayPCA.Rmd
8f70ae7f0924702bd551e10c4989d050 *doc/Introduction_to_pathwayPCA.html
17ed0d297b5d62b393a3f92d25c842f8 *doc/Supplement1-Quickstart_Guide.R
2be8142af557d037b1485c794ed3d87a *doc/Supplement1-Quickstart_Guide.Rmd
45feb82c1743f974c75cc9a427a73827 *doc/Supplement1-Quickstart_Guide.html
4cba772713c5741441ce996d054287f9 *doc/Supplement2-Importing_Data.R
8c1115576415553ea1dc79734c9b0d0f *doc/Supplement2-Importing_Data.Rmd
c130e4a57a9d9f885429a433c8a22548 *doc/Supplement2-Importing_Data.html
b862c35515686ca4c3489bc6608c8be1 *doc/Supplement3-Create_Omics_Objects.R
2535a20774599b4a30b24fb148c15ff8 *doc/Supplement3-Create_Omics_Objects.Rmd
be662b91392da4f8bad423eb5fbf1eab *doc/Supplement3-Create_Omics_Objects.html
470089c81e9f35ed9b8e8f5aa6212437 *doc/Supplement4-Methods_Walkthrough.R
67d6220efb2eaf43049d0aef4c35a4ab *doc/Supplement4-Methods_Walkthrough.Rmd
84bdbb937a93a8d76a6370d2e3c31cdf *doc/Supplement4-Methods_Walkthrough.html
1292f0874c4e54a2e27e27cbc1a39149 *doc/Supplement5-Analyse_Results.R
c028c5eb0b6f22b6ebcf46c50e2ea9ce *doc/Supplement5-Analyse_Results.Rmd
4d19aeb5f28420cf606130bad18939f6 *doc/Supplement5-Analyse_Results.html
d238b028d6d5e3794d8e19164ec05c47 *doc/index.html
99811158213c6dfa6a24feff2be88ee5 *extdata/c2.cp.v6.0.symbols.gmt
74685fc5d77c3936fef2a0e0c9e1901b *extdata/ex_assay_subset.csv
0e7c901389cf3fcdc5ce562933cc7057 *extdata/ex_pInfo_subset.csv
efdfb2f3fc05c7e045d081fecbd11de2 *extdata/wikipathways_human.gmt
1f033164408ecaa9106ecee1ed39b304 *extdata/wikipathways_human_symbol.gmt
d3f9556dfc043db23e7d70d0833b727c *help/AnIndex
8471e25100fc6a30908f043658677be0 *help/aliases.rds
ab48b6d206c80f7e9fa9e4692ae2d0d2 *help/paths.rds
088ecb61aa5b2f1a335e9149fe773334 *help/pathwayPCA.rdb
006538071f08c9a613ce975b97c8ffdb *help/pathwayPCA.rdx
7396e7db68ac2b30062daed306b65443 *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
64ac06624895b3668f873d9e0df8383f *scripts/convert_EntrezID_to_HGNC_Ensembl.R
6eb59c22577664c03556dca3af6babfa *scripts/create_airway_example.R
10e4c4bf49a5517a9bac852dbcfeb0b7 *scripts/generate_ex_subset.R
01468ffb17b9b43a1264cfdcb8d23961 *scripts/import_AP_gmt_20180601.R
fc855d6612c935a5cfe91b4c07e2d7a8 *scripts/issue_65_20220222.R
e41fba24c300c0b54f8c8047be76ceee *scripts/multi_pathway_overlap_fishers.R
