Package: mspms
Type: Package
Title: Tools for the analysis of MSP-MS data
Version: 1.2.0
Authors@R: person("Charlie", "Bayne", email = "baynec2@gmail.com",
    role = c("aut", "cre"),comment=c(ORCID="0000-0003-1870-5298"))
Description: This package provides functions for the analysis of data
        generated by the multiplex substrate profiling by mass
        spectrometry for proteases (MSP-MS) method. Data exported from
        upstream proteomics software is accepted as input and
        subsequently processed for analysis. Tools for statistical
        analysis, visualization, and interpretation of the data are
        provided.
License: MIT + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.2
Depends: R (>= 4.4.0)
biocViews: Proteomics, MassSpectrometry, Preprocessing
LazyData: true
Imports: QFeatures, limma, SummarizedExperiment, magrittr, rlang,
        dplyr, purrr, stats, tidyr, stringr, ggplot2, ggseqlogo,
        heatmaply, readr, rstatix, tibble, ggpubr
Suggests: knitr, testthat (>= 3.0.0), downloadthis, DT, rmarkdown,
        BiocStyle, imputeLCMD
Config/testthat/edition: 3
URL: https://github.com/baynec2/mspms
BugReports: https://github.com/baynec2/mspms/issues
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libglpk-dev make libmagick++-dev gsfonts
        libicu-dev libxml2-dev libssl-dev libx11-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:33:10 UTC
RemoteUrl: https://github.com/bioc/mspms
RemoteRef: RELEASE_3_22
RemoteSha: 04133d6fae057557071f1da24da8aac6eb89c09d
NeedsCompilation: no
Packaged: 2026-01-24 19:58:04 UTC; root
Author: Charlie Bayne [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-1870-5298>)
Maintainer: Charlie Bayne <baynec2@gmail.com>
Built: R 4.5.2; ; 2026-01-24 19:59:51 UTC; windows
