Package: miaTime
Type: Package
Title: Microbiome Time Series Analysis
Version: 1.0.0
Authors@R: 
     c(person(given = "Leo", family = "Lahti", role = c("aut"),
              email = "leo.lahti@iki.fi",
              comment = c(ORCID = "0000-0001-5537-637X")),
       person(given = "Tuomas", family = "Borman", role = c("aut", "cre"),
              email = "tuomas.v.borman@utu.fi",
              comment = c(ORCID = "0000-0002-8563-8884")),
       person(given = "Yagmur", family = "Simsek", role = c("aut"),
              email = "yagmur.simsek@hsrw.org"),
       person(given = "Sudarshan", family = "Shetty", role = c("ctb"),
              email = "sudarshanshetty9@gmail.com"),
       person(given = "Chouaib", family = "Benchraka", role = c("ctb")),
       person(given = "Muluh", family = "Muluh", role = c("ctb")),
       person(given = "Ali", family = "Hajj", role = c("ctb"))
      )
Description: The `miaTime` package provides tools for microbiome time
        series analysis based on (Tree)SummarizedExperiment
        infrastructure.
biocViews: Microbiome, Software, Sequencing
License: Artistic-2.0 | file LICENSE
Depends: R (>= 4.4.0), mia
Imports: dplyr, methods, S4Vectors, SingleCellExperiment, stats,
        SummarizedExperiment, tidyr, TreeSummarizedExperiment
Suggests: BiocStyle, devtools, ggplot2, knitr, lubridate, miaViz,
        rmarkdown, scater, testthat, vegan
URL: https://github.com/microbiome/miaTime
BugReports: https://github.com/microbiome/miaTime/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
VignetteBuilder: knitr
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libfribidi-dev libglpk-dev make libgsl0-dev libharfbuzz-dev
        libicu-dev libjpeg-dev libpng-dev libtiff-dev libwebp-dev
        libxml2-dev libssl-dev libx11-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:37:15 UTC
RemoteUrl: https://github.com/bioc/miaTime
RemoteRef: RELEASE_3_22
RemoteSha: 26f2a82a32d36fd9d229701ab7064a64718e87aa
NeedsCompilation: no
Packaged: 2026-01-25 09:03:30 UTC; root
Author: Leo Lahti [aut] (ORCID: <https://orcid.org/0000-0001-5537-637X>),
  Tuomas Borman [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8563-8884>),
  Yagmur Simsek [aut],
  Sudarshan Shetty [ctb],
  Chouaib Benchraka [ctb],
  Muluh Muluh [ctb],
  Ali Hajj [ctb]
Maintainer: Tuomas Borman <tuomas.v.borman@utu.fi>
Built: R 4.5.2; ; 2026-01-25 09:06:03 UTC; windows
