Package: isobar
Title: Analysis and quantitation of isobarically tagged MSMS proteomics
        data
Description: isobar provides methods for preprocessing, normalization,
        and report generation for the analysis of quantitative mass
        spectrometry proteomics data labeled with isobaric tags, such
        as iTRAQ and TMT. Features modules for integrating and
        validating PTM-centric datasets (isobar-PTM). More information
        on http://www.ms-isobar.org.
Version: 1.56.0
Author: Florian P Breitwieser <florian.bw@gmail.com> and Jacques
        Colinge <jacques.colinge@inserm.fr>, with contributions from
        Alexey Stukalov <stukalov@biochem.mpg.de>, Xavier Robin
        <xavier.robin@unige.ch> and Florent Gluck
        <florent.gluck@unige.ch>
Maintainer: Florian P Breitwieser <florian.bw@gmail.com>
biocViews: ImmunoOncology, Proteomics, MassSpectrometry,
        Bioinformatics, MultipleComparisons, QualityControl
Depends: R (>= 2.10.0), Biobase, stats, methods
Imports: distr, plyr, biomaRt, ggplot2
Suggests: MSnbase, OrgMassSpecR, XML, RJSONIO, Hmisc, gplots,
        RColorBrewer, gridExtra, limma, boot, DBI, MASS
LazyLoad: yes
License: LGPL-2
URL: https://github.com/fbreitwieser/isobar
BugReports: https://github.com/fbreitwieser/isobar/issues
Collate: utils.R ProteinGroup-class.R IBSpectra-class.R isobar-import.R
        IBSpectra-plots.R NoiseModel-class.R Tlsd-class.R
        ratio-methods.R distr-methods.R sharedpep-methods.R
        report-utils-xls.R report-utils-tex.R report-utils.R
        metareport-utils.R ptm-methods.R MSnSet-methods.R zzz.R
Config/pak/sysreqs: libicu-dev libpng-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:09:30 UTC
RemoteUrl: https://github.com/bioc/isobar
RemoteRef: RELEASE_3_22
RemoteSha: c9c34f7a94be55d87be85a0f2acd717edb5d438a
NeedsCompilation: no
Packaged: 2026-02-03 08:14:21 UTC; root
Built: R 4.5.2; ; 2026-02-03 08:17:18 UTC; windows
