Frames                  Constructor for a 'Frames' object
Frames-class            Frames class
KinematicsFeatures-class
                        KinematicsFeatures class
KinematicsFeaturesSet-class
                        KinematicsFeaturesSet class
LinkedParticleSet-class
                        LinkedParticleSet class
MesenteriumSubset       A sample 'Frames' object
ParticleSet-class       ParticleSet class
TrajectorySet-class     TrajectorySet class
add.contours            Add object contours to a 'Frames' object
                        Creates a 'Frames' object containing raw
                        information, combined with the segmented images
                        and the relative trajectory under analysis
addParticles            Combines the information from a raw 'Frames'
                        object and the corresponding preprocessed one
axesInfo                Info on the dimensions of the FOV
candidate.platelets     A sample 'ParticleSet' object
channel.Frames          Channel extraction for 'objects'
computeMSD              Calculates the Mean Squared Displacement for a
                        trajectory
crop.Frames             Cut borders of a 'Frames' object
export.Frames           Exports a 'Frames' object
export.particles        Exports a 'ParticleSet' object
extractKinematics.traj
                        Calculate a set of kinematics parameters from a
                        single trajectory
initialize.LinkedParticleSet
                        Initialize a 'ParticleSet' object for
                        subsequent linking/tracking
inspect.Frames          Explore the frames of a 'Frames'
kinematics              Calculate a set of kinematics parameter from a
                        'TrajectorySet' object, or a single parameter,
                        or from a single trajectory (all possible
                        combinations)
length.Frames           Compute the length of render frames in a
                        'Frames' object
link.particles          Links a 'ParticleSet' object
matchTrajToParticles    Match trajectories to related particles.
normalizeFrames         Normalize the values of a 'Frames' object
particles               Extracts particles from the images of a
                        'Frames' object.
penaltyFunctionGenerator
                        Generate a penalty function
plot.TrajectorySet      3D representation of a 'TrajectorySet' object
plot2D.TrajectorySet    2D projection of a 'TrajectorySet' object
preprocess.Frames       Preprocessing function for 'Frames' objects
read.Frames             Constructor for a 'Frames' object
read.particles          Constructor for a 'ParticleSet' object
repmat                  Function equivalent for MATLAB's repmat -
                        Replicate and tile arrays
rotate.Frames           Rotates all images in a 'Frames' object
select.Frames           Extracts subsets of frames from a 'Frames'
                        object
select.particles        Performs filtering on a 'ParticleSet' object
shinyFlow               Shiny application for exploring the features
                        and parameters provided by 'flowcatchR'
show,Frames-method      Display conveniently a 'Frames' object
show,KinematicsFeatures-method
                        Displaying conveniently a 'KinematicsFeatures'
                        object
show,KinematicsFeaturesSet-method
                        Display conveniently a 'KinematicsFeatureSet'
                        object
show,LinkedParticleSet-method
                        Display conveniently a 'LinkedParticleSet'
                        object
show,ParticleSet-method
                        Display conveniently a 'ParticleSet' object
show,TrajectorySet-method
                        Display conveniently a 'TrajectorySet' object
snap                    Snap the features of the closest particle
                        identified
toCartesianCoords       Converts polar coordinates to cartesian
                        coordinates
toPolarCoords           Converts cartesian coordinates to polar
                        coordinates
trajectories            Generate trajectories
