Package: csdR
Title: Differential gene co-expression
Version: 1.16.0
Date: 07-11-2024
Authors@R: 
    person(given = "Jakob Peder",
   family = "Pettersen",
   role = c("aut","cre"),
   email = "jakobpeder.pettersen@gmail.com",
   comment = c(ORCID = "0000-0002-3485-1634")
   )
Description: This package contains functionality to run differential
        gene co-expression across two different conditions. The
        algorithm is inspired by Voigt et al. 2017 and finds Conserved,
        Specific and Differentiated genes (hence the name CSD). This
        package include efficient and variance calculation by
        bootstrapping and Welford's algorithm.
Depends: R (>= 4.1.0)
Imports: WGCNA, glue, RhpcBLASctl, matrixStats, Rcpp
License: GPL-3
Encoding: UTF-8
NeedsCompilation: yes
BugReports: https://github.com/AlmaasLab/csdR/issues
URL: https://almaaslab.github.io/csdR,
        https://github.com/AlmaasLab/csdR
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
LinkingTo: Rcpp
biocViews: DifferentialExpression, GraphAndNetwork, GeneExpression,
        Network
Suggests: rmarkdown, knitr, testthat (>= 3.0.0), BiocStyle, magrittr,
        igraph, dplyr
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/pak/sysreqs: make libicu-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:10:35 UTC
RemoteUrl: https://github.com/bioc/csdR
RemoteRef: RELEASE_3_22
RemoteSha: 089bd25ea2f18259b489b59296f993a4195cf71f
Packaged: 2026-02-16 09:30:31 UTC; root
Author: Jakob Peder Pettersen [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3485-1634>)
Maintainer: Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com>
Built: R 4.5.2; x86_64-w64-mingw32; 2026-02-16 09:32:12 UTC; windows
Archs: x64
