Package: consensusOV
Type: Package
Title: Gene expression-based subtype classification for high-grade
        serous ovarian cancer
Version: 1.32.0
Date: 2024-02-05
Authors@R: c(
  person('Gregory', 'Chen', 'M', role=c('aut')),
  person('Lavanya', 'Kannan', role=c('aut')),
  person('Ludwig', 'Geistlinger', role=c('aut')),
  person('Victor', 'Kofia', role=c('aut')),
  person('Levi', 'Waldron', role=c('aut')),
  person('Christopher', 'Eeles', email='christopher.eeles@uhnresearch.ca', role=c('ctb')),
  person('Benjamin', 'Haibe-Kains', email='benjamin.haibe.kains@utoronto.ca', role=c('aut', 'cre'))
  )
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>
Description: This package implements four major subtype classifiers for
        high-grade serous (HGS) ovarian cancer as described by Helland
        et al. (PLoS One, 2011), Bentink et al. (PLoS One, 2012),
        Verhaak et al. (J Clin Invest, 2013), and Konecny et al. (J
        Natl Cancer Inst, 2014). In addition, the package implements a
        consensus classifier, which consolidates and improves on the
        robustness of the proposed subtype classifiers, thereby
        providing reliable stratification of patients with HGS ovarian
        tumors of clearly defined subtype.
License: Artistic-2.0
Depends: R (>= 3.6)
Imports: Biobase, GSVA (>= 1.50.0), gdata, genefu, limma, matrixStats,
        randomForest, stats, utils, methods, BiocParallel
URL: http://www.pmgenomics.ca/bhklab/software/consensusOV
Suggests: BiocStyle, ggplot2, knitr, rmarkdown, magick
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.3.1
LazyData: true
biocViews: Classification, Clustering, DifferentialExpression,
        GeneExpression, Microarray, Transcriptomics
BugReports: https://github.com/bhklab/consensusOV/issues
Config/pak/sysreqs: libmagick++-dev gsfonts libicu-dev libpng-dev
        libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:39:32 UTC
RemoteUrl: https://github.com/bioc/consensusOV
RemoteRef: RELEASE_3_22
RemoteSha: 04a4249c4b37cbad6cccda3c3618c6159b044a21
NeedsCompilation: no
Packaged: 2026-02-15 08:19:00 UTC; root
Author: Gregory M Chen [aut],
  Lavanya Kannan [aut],
  Ludwig Geistlinger [aut],
  Victor Kofia [aut],
  Levi Waldron [aut],
  Christopher Eeles [ctb],
  Benjamin Haibe-Kains [aut, cre]
Built: R 4.5.2; ; 2026-02-15 08:21:09 UTC; windows
