Package: consICA
Type: Package
biocViews: Technology, StatisticalMethod, Sequencing, RNASeq,
        Transcriptomics, Classification, FeatureExtraction
Title: consensus Independent Component Analysis
Version: 2.8.0
Authors@R: 
    c(person(given = "Petr V.",
             family = "Nazarov",
             role = c("aut", "cre"),
             email = "petr.nazarov@lih.lu",
             comment = c(ORCID = "0000-0003-3443-0298")),
        person(given = "Tony",
               family = "Kaoma",
               role="aut",
               email="tony.kaoma@lih.lu",
               comment = c(ORCID = "0000-0002-1269-4826")),
        person(given = "Maryna",
             family = "Chepeleva",
             role = c("aut"),
             email = "maryna.chepeleva@gmail.com",
             comment = c(ORCID = "0000-0003-3036-4916"))       
    )
Description: consICA implements a data-driven deconvolution method –
        consensus independent component analysis (ICA) to decompose
        heterogeneous omics data and extract features suitable for
        patient diagnostics and prognostics. The method separates
        biologically relevant transcriptional signals from technical
        effects and provides information about the cellular composition
        and biological processes. The implementation of parallel
        computing in the package ensures efficient analysis of modern
        multicore systems.
BugReports: https://github.com/biomod-lih/consICA/issues
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
Imports: fastICA (>= 1.2.1), sm, org.Hs.eg.db, GO.db, stats,
        SummarizedExperiment, BiocParallel, graph, ggplot2, methods,
        Rfast, pheatmap, survival, topGO, graphics, grDevices
Depends: R (>= 4.2.0)
Suggests: knitr, BiocStyle, rmarkdown, testthat, Seurat
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Config/pak/sysreqs: make libpng-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:18:38 UTC
RemoteUrl: https://github.com/bioc/consICA
RemoteRef: RELEASE_3_22
RemoteSha: e606646659a1cffcdb33b031f6e1464971c6393b
NeedsCompilation: no
Packaged: 2026-01-24 20:44:04 UTC; root
Author: Petr V. Nazarov [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3443-0298>),
  Tony Kaoma [aut] (ORCID: <https://orcid.org/0000-0002-1269-4826>),
  Maryna Chepeleva [aut] (ORCID: <https://orcid.org/0000-0003-3036-4916>)
Maintainer: Petr V. Nazarov <petr.nazarov@lih.lu>
Built: R 4.5.2; ; 2026-01-24 20:46:57 UTC; windows
