Package: combi
Type: Package
Title: Compositional omics model based visual integration
Version: 1.22.0
Authors@R: 
    c(person(given = "Stijn", family = "Hawinkel", 
    email = "stijn.hawinkel@psb.ugent.be", 
    role=c("cre", "aut"), comment = c(ORCID = "0000-0002-4501-5180")))
Description: This explorative ordination method combines
        quasi-likelihood estimation, compositional regression models
        and latent variable models for integrative visualization of
        several omics datasets. Both unconstrained and constrained
        integration are available. The results are shown as
        interpretable, compositional multiplots.
License: GPL-2
Encoding: UTF-8
Depends: R (>= 4.0), DBI
RoxygenNote: 7.2.3
Imports: ggplot2, nleqslv, phyloseq, tensor, stats, limma, Matrix (>=
        1.6.0), BB, reshape2, alabama, cobs, Biobase, vegan, grDevices,
        graphics, methods, SummarizedExperiment
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
biocViews: Metagenomics, DimensionReduction, Microbiome, Visualization,
        Metabolomics
BugReports: https://github.com/CenterForStatistics-UGent/combi/issues
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:57:46 UTC
RemoteUrl: https://github.com/bioc/combi
RemoteRef: RELEASE_3_22
RemoteSha: e4cb095ed7d1510ca518fd121eabfcc37bbd6962
NeedsCompilation: no
Packaged: 2026-01-28 07:11:38 UTC; root
Author: Stijn Hawinkel [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-4501-5180>)
Maintainer: Stijn Hawinkel <stijn.hawinkel@psb.ugent.be>
Built: R 4.5.2; ; 2026-01-28 07:13:47 UTC; windows
