Type: Package
Package: chevreulProcess
Title: Tools for managing SingleCellExperiment objects as projects
Version: 1.2.0
Authors@R: c(
    person("Kevin", "Stachelek", , "kevin.stachelek@gmail.com", 
    role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2085-695X")),
    person("Bhavana", "Bhat", , "bhavanabhat29@gmail.com", role = "aut")
    )
Description: Tools for analyzing SingleCellExperiment objects as
        projects. for input into the chevreulShiny app downstream.
        Includes functions for analysis of single cell RNA sequencing
        data. Supported by NIH grants R01CA137124 and R01EY026661 to
        David Cobrinik.
License: MIT + file LICENSE
URL: https://github.com/whtns/chevreulProcess,
        https://whtns.github.io/chevreulProcess/
Date: 2024-03-24
BugReports: https://github.com/cobriniklab/chevreulProcess/issues
Depends: R (>= 4.4.0), SingleCellExperiment, scater
Imports: batchelor, bluster, circlize, cluster, DBI, dplyr,
        EnsDb.Hsapiens.v86, ensembldb, fs, GenomicFeatures, glue,
        megadepth, methods, purrr, RSQLite, S4Vectors, scran, scuttle,
        stringr, tibble, tidyr, tidyselect, utils
Suggests: BiocStyle, knitr, RefManageR, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
biocViews: Coverage, RNASeq, Sequencing, Visualization, GeneExpression,
        Transcription, SingleCell, Transcriptomics, Normalization,
        Preprocessing, QualityControl, DimensionReduction, DataImport
Config/testthat/edition: 3
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libfribidi-dev git libglpk-dev make libharfbuzz-dev libbz2-dev
        libgit2-dev libicu-dev libjpeg-dev liblzma-dev libpng-dev
        libtiff-dev libwebp-dev libxml2-dev libssl-dev libx11-dev
        xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:34:17 UTC
RemoteUrl: https://github.com/bioc/chevreulProcess
RemoteRef: RELEASE_3_22
RemoteSha: a07dc13b225ede06071b2accd20afe014f6ab632
NeedsCompilation: no
Packaged: 2026-02-10 09:04:46 UTC; root
Author: Kevin Stachelek [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2085-695X>),
  Bhavana Bhat [aut]
Maintainer: Kevin Stachelek <kevin.stachelek@gmail.com>
Built: R 4.5.2; ; 2026-02-10 09:10:13 UTC; windows
