Package: VplotR
Type: Package
Title: Set of tools to make V-plots and compute footprint profiles
Version: 1.20.0
Date: 2025-07-31
Encoding: UTF-8
Authors@R: 
    c(person(given = "Jacques",
           family = "Serizay",
           role = c("aut", "cre"),
           email = "jacquesserizay@gmail.com",
           comment = c(ORCID = "0000-0002-4295-0624")))
Description: The pattern of digestion and protection from DNA nucleases
        such as DNAse I, micrococcal nuclease, and Tn5 transposase can
        be used to infer the location of associated proteins. This
        package contains useful functions to analyze patterns of
        paired-end sequencing fragment density. VplotR facilitates the
        generation of V-plots and footprint profiles over single or
        aggregated genomic loci of interest.
URL: https://github.com/js2264/VplotR
BugReports: https://github.com/js2264/VplotR/issues
Depends: R (>= 4.0), GenomicRanges, IRanges, ggplot2
Imports: cowplot, magrittr, Seqinfo, GenomeInfoDb, GenomicAlignments,
        RColorBrewer, zoo, Rsamtools, S4Vectors, parallel, reshape2,
        methods, graphics, stats
Suggests: GenomicFeatures, TxDb.Scerevisiae.UCSC.sacCer3.sgdGene,
        testthat, covr, knitr, rmarkdown, pkgdown
VignetteBuilder: knitr
biocViews: NucleosomePositioning, Coverage, Sequencing,
        BiologicalQuestion, ATACSeq, Alignment
License: GPL (>= 3)
RoxygenNote: 7.2.3
Config/pak/sysreqs: libbz2-dev libicu-dev liblzma-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:01:33 UTC
RemoteUrl: https://github.com/bioc/VplotR
RemoteRef: RELEASE_3_22
RemoteSha: 33ae55cb0b380f75c7e4493b8bbb207d109f1f3c
NeedsCompilation: no
Packaged: 2026-01-22 18:24:04 UTC; root
Author: Jacques Serizay [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-4295-0624>)
Maintainer: Jacques Serizay <jacquesserizay@gmail.com>
Built: R 4.5.2; ; 2026-01-22 18:26:47 UTC; windows
