Package: VaSP
Type: Package
Version: 1.22.0
Title: Quantification and Visualization of Variations of Splicing in
        Population
Authors@R: c(person("Huihui", "Yu", role = c("aut", "cre"), 
    email = "yuhuihui2011@foxmail.com", comment = c(ORCID = "0000-0003-2725-1937")),
    person("Qian", "Du", role="aut",email = "djyjin@gmail.com",
    comment = c(ORCID = '0000-0003-3864-8745')),
    person("Chi", "Zhang", role="aut", email="czhang5@unl.edu", 
    comment = c(ORCID = '0000-0002-1827-8137')))
Description: Discovery of genome-wide variable alternative splicing
        events from short-read RNA-seq data and visualizations of gene
        splicing information for publication-quality multi-panel
        figures in a population. (Warning: The visualizing function is
        removed due to the dependent package Sushi deprecated. If you
        want to use it, please change back to an older version.)
URL: https://github.com/yuhuihui2011/VaSP
BugReports: https://github.com/yuhuihui2011/VaSP/issues
License: GPL (>= 2.0)
Depends: R (>= 4.0), ballgown
Imports: IRanges, GenomicRanges, S4Vectors, parallel, matrixStats,
        GenomicAlignments, GenomeInfoDb, Rsamtools, cluster, stats,
        graphics, methods
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews: RNASeq, AlternativeSplicing, DifferentialSplicing,
        StatisticalMethod, Visualization, Preprocessing, Clustering,
        DifferentialExpression, KEGG, ImmunoOncology
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.1.1
Config/pak/sysreqs: make libbz2-dev liblzma-dev libpng-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:57:01 UTC
RemoteUrl: https://github.com/bioc/VaSP
RemoteRef: RELEASE_3_22
RemoteSha: 905a5ca3e310caaa57d733ccdd8f670150f6175d
NeedsCompilation: no
Packaged: 2026-01-24 22:27:54 UTC; root
Author: Huihui Yu [aut, cre] (ORCID: <https://orcid.org/0000-0003-2725-1937>),
  Qian Du [aut] (ORCID: <https://orcid.org/0000-0003-3864-8745>),
  Chi Zhang [aut] (ORCID: <https://orcid.org/0000-0002-1827-8137>)
Maintainer: Huihui Yu <yuhuihui2011@foxmail.com>
Built: R 4.5.2; ; 2026-01-24 22:30:00 UTC; windows
