BSJ_details             BSJ_details This function returns details of a
                        BSJ string and returns a list of coordinates.
                        Can accept two different formats, Ularcirc or
                        generic.
Compatible_Annotation_DBs
                        Compatible_Annotation_DBs
FilterChimericJuncs     FilterChimericJuncs
FilterChimeric_Ularcirc
                        Wrapper function for Ularcirc shiny app which
                        expects a list of objects to be returned
Junction_Sequence_from_Genome
                        Grab_BS_Junc_Sequence
RAD_score               RAD_score
SelectUniqueJunctions   SelectUniqueJunctions
Ularcirc                Ularcirc
bsj_fastq_generate      bsj_fastq_generate
bsj_to_circRNA_sequence
                        bsj_to_circRNA_sequence
chimericFilters         chimericFilters
chimericStats           chimericStats
circSequence            circSequence This function returns pre-defined
                        full length circRNA sequences.
loadSTAR_chimeric       loadSTAR_chimeric
load_miRBase_fasta      load_miRBase_fasta This function extracts
                        species specific mirbase sequences as a
                        Biostrings RNAstringset.
miR_binding_site_Analysis
                        miR_binding_site_Analysis This function
                        analyses a genomic (RNA or DNA) sequence for
                        matching miRNA seed sequences.
plot_AllJunctions       plot_AllJunctions
sequence_from_exon_coords
                        sequence_from_exon_coords
