Package: SomaticSignatures
Type: Package
Title: Somatic Signatures
Version: 2.46.0
Author: Julian Gehring
Maintainer: Julian Gehring <jg-bioc@gmx.com>
Description: The SomaticSignatures package identifies mutational
        signatures of single nucleotide variants (SNVs).  It provides a
        infrastructure related to the methodology described in
        Nik-Zainal (2012, Cell), with flexibility in the matrix
        decomposition algorithms.
URL: https://github.com/juliangehring/SomaticSignatures
Imports: S4Vectors, IRanges, Seqinfo, Biostrings, ggplot2, ggbio,
        reshape2, NMF, pcaMethods, Biobase, methods, proxy
Depends: R (>= 3.5.0), VariantAnnotation, GenomicRanges, NMF
Suggests: testthat, knitr, parallel, GenomeInfoDb,
        BSgenome.Hsapiens.1000genomes.hs37d5, SomaticCancerAlterations,
        ggdendro, fastICA, sva
VignetteBuilder: knitr
ByteCompile: TRUE
License: MIT + file LICENSE
BugReports: https://support.bioconductor.org
LazyLoad: yes
biocViews: Sequencing, SomaticMutation, Visualization, Clustering,
        GenomicVariation, StatisticalMethod
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:17:57 UTC
RemoteUrl: https://github.com/bioc/SomaticSignatures
RemoteRef: RELEASE_3_22
RemoteSha: 7058eda5762384a6377740768f9453bad48ddda3
NeedsCompilation: no
Packaged: 2026-02-10 16:13:01 UTC; root
Built: R 4.5.2; ; 2026-02-10 16:16:19 UTC; windows
