Package: RiboCrypt
Type: Package
Title: Interactive visualization in genomics
Version: 1.16.0
Authors@R: c(
  person(given = "Michal", family = "Swirski", email = "michal.swirski@uw.edu.pl", role = c("aut", "cre", "cph")),
  person(given = "Haakon", family = "Tjeldnes", email = "hauken_heyken@hotmail.com", role = c("aut","ctb")),
  person(given = "Kornel", family = "Labun", email = "kornellabun@gmail.com", role = c("ctb")))
License: MIT + file LICENSE
Description: R Package for interactive visualization and browsing NGS
        data. It contains a browser for both transcript and genomic
        coordinate view. In addition a QC and general metaplots are
        included, among others differential translation plots and gene
        expression plots. The package is still under development.
biocViews: Software, Sequencing, RiboSeq, RNASeq,
Encoding: UTF-8
BugReports: https://github.com/m-swirski/RiboCrypt/issues
URL: https://github.com/m-swirski/RiboCrypt
Depends: R (>= 3.6.0), ORFik (>= 1.13.12)
Imports: bslib, BiocGenerics, BiocParallel, Biostrings, ComplexHeatmap,
        cowplot, crosstalk, data.table, dplyr, DT, fst, Seqinfo,
        GenomicFeatures, GenomicRanges, ggplot2, grid, htmlwidgets,
        httr, IRanges, jsonlite, knitr, markdown, NGLVieweR, plotly,
        rlang, rclipboard, RCurl, rtracklayer, shiny, shinycssloaders,
        shinyhelper, shinyjs, shinyjqui, shinyWidgets, stringr, writexl
Suggests: testthat, rmarkdown, BiocStyle, BSgenome,
        BSgenome.Hsapiens.UCSC.hg19
RoxygenNote: 7.3.1
VignetteBuilder: knitr
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev perl libx11-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:13:40 UTC
RemoteUrl: https://github.com/bioc/RiboCrypt
RemoteRef: RELEASE_3_22
RemoteSha: e202b8e9a30f51fd9339fb5583e3e210cfe19fe2
NeedsCompilation: no
Packaged: 2026-02-10 16:09:33 UTC; root
Author: Michal Swirski [aut, cre, cph],
  Haakon Tjeldnes [aut, ctb],
  Kornel Labun [ctb]
Maintainer: Michal Swirski <michal.swirski@uw.edu.pl>
Built: R 4.5.2; ; 2026-02-10 16:13:24 UTC; windows
