Package: Polytect
Title: An R package for digital data clustering
Version: 1.2.0
Authors@R: 
    person("Yao", "Chen", , "emmachentar@live.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-8172-3996"))
Description: Polytect is an advanced computational tool designed for
        the analysis of multi-color digital PCR data. It provides
        automatic clustering and labeling of partitions into distinct
        groups based on clusters first identified by the flowPeaks
        algorithm. Polytect is particularly useful for researchers in
        molecular biology and bioinformatics, enabling them to gain
        deeper insights into their experimental results through precise
        partition classification and data visualization.
biocViews: ddPCR, Clustering, MultiChannel, Classification
License: Artistic-2.0
URL: https://github.com/emmachenlingo/Polytect
BugReports: https://github.com/emmachenlingo/Polytect/issues
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends: R (>= 4.4.0)
Imports: stats, utils, grDevices, mvtnorm, sn, dplyr, flowPeaks,
        ggplot2, tidyverse, cowplot, mlrMBO, DiceKriging, smoof,
        ParamHelpers, lhs, rgenoud, BiocManager
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, ddPCRclust
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev libfribidi-dev
        libgdal-dev gdal-bin libgeos-dev libglu1-mesa-dev libgmp3-dev
        make libgsl0-dev libharfbuzz-dev jags libicu-dev libjpeg-dev
        libpng-dev libtiff-dev libwebp-dev libxml2-dev libmpfr-dev
        libopenmpi-dev libssl-dev libproj-dev libx11-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:33:29 UTC
RemoteUrl: https://github.com/bioc/Polytect
RemoteRef: RELEASE_3_22
RemoteSha: 8145906e80e9c1f4506f32100aa7f37a46fb3b6c
NeedsCompilation: no
Packaged: 2026-02-02 09:30:27 UTC; root
Author: Yao Chen [aut, cre] (ORCID: <https://orcid.org/0000-0001-8172-3996>)
Maintainer: Yao Chen <emmachentar@live.com>
Built: R 4.5.2; ; 2026-02-02 09:32:03 UTC; windows
