Package: OGRE
Type: Package
Title: Calculate, visualize and analyse overlap between genomic regions
Version: 1.14.0
Authors@R: c(
    person("Sven", "Berres", email="svenbioinf@gmail.com", role = c("aut","cre")),
    person("Jörg", "Gromoll", role = c("ctb")),
    person("Marius", "Wöste", role = c("ctb")),
    person("Sarah", "Sandmann", role = c("ctb")),
    person("Sandra", "Laurentino", role = c("ctb")))
Description: OGRE calculates overlap between user defined genomic
        region datasets. Any regions can be supplied i.e. genes, SNPs,
        or reads from sequencing experiments. Key numbers help analyse
        the extend of overlaps which can also be visualized at a
        genomic level.
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Imports: GenomicRanges, methods, data.table, assertthat, ggplot2, Gviz,
        IRanges, AnnotationHub, grDevices, stats, Seqinfo,
        GenomeInfoDb, shiny, shinyFiles, DT, rtracklayer,
        shinydashboard, shinyBS,tidyr
Depends: R (>= 4.2.0), S4Vectors
Suggests: testthat (>= 3.0.0), knitr (>= 1.36), rmarkdown (>= 2.11)
biocViews: Software, WorkflowStep, BiologicalQuestion, Annotation,
        Metagenomics, Visualization, Sequencing
BugReports: https://github.com/svenbioinf/OGRE/issues
URL: https://github.com/svenbioinf/OGRE/
Config/testthat/edition: 3
Config/pak/sysreqs: make libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:14:29 UTC
RemoteUrl: https://github.com/bioc/OGRE
RemoteRef: RELEASE_3_22
RemoteSha: 0f074f478c0117d066ff97b41583ac94918df5fc
NeedsCompilation: no
Packaged: 2026-01-30 08:17:37 UTC; root
Author: Sven Berres [aut, cre],
  Jörg Gromoll [ctb],
  Marius Wöste [ctb],
  Sarah Sandmann [ctb],
  Sandra Laurentino [ctb]
Maintainer: Sven Berres <svenbioinf@gmail.com>
Built: R 4.5.2; ; 2026-01-30 08:21:05 UTC; windows
