# Utilities for Annotation of Metabolomics Data

## Documentation for package ‘MetaboAnnotation’ version 1.14.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

$-method | Representation of generic objects matches
$-method | Representation of Spectra matches
addMatches | Representation of generic objects matches
addMatches-method | Representation of generic objects matches
addProcessing-method | Representation of Spectra matches
colnames-method | Representation of generic objects matches
colnames-method | Representation of Spectra matches
CompAnnotationSource | Compound Annotation Sources
CompAnnotationSource-class | Compound Annotation Sources
CompareSpectraParam | Matching MS Spectra against a reference
CompareSpectraParam-class | Matching MS Spectra against a reference
CompDbSource | Compound Annotation Sources for 'CompDb' databases
CompDbSource-class | Compound Annotation Sources for 'CompDb' databases
createStandardMixes | Create Standard Mixes from a Matrix of Standard Compounds
endoapply | Representation of generic objects matches
endoapply-method | Representation of generic objects matches
filterMatches | Representation of generic objects matches
filterMatches-method | Representation of generic objects matches
lapply-method | Representation of generic objects matches
length-method | Representation of generic objects matches
Mass2MzParam | Matching of numeric values
Mass2MzRtParam | Matching of numeric values
MassBankSource | Compound Annotation Sources for 'CompDb' databases
Matched | Representation of generic objects matches
Matched-class | Representation of generic objects matches
matchedData | Representation of generic objects matches
matchedData-method | Representation of generic objects matches
matchedData-method | Representation of Spectra matches
MatchedSpectra | Representation of Spectra matches
MatchedSpectra-class | Representation of Spectra matches
matches | Representation of generic objects matches
matchFormula | Chemical Formula Matching
matchFormula-method | Chemical Formula Matching
MatchForwardReverseParam | Matching MS Spectra against a reference
MatchForwardReverseParam-class | Matching MS Spectra against a reference
matchMz | Matching of numeric values
matchSpectra | Spectral matching
matchSpectra-method | Compound Annotation Sources
matchSpectra-method | Matching MS Spectra against a reference
matchValues | Matching of numeric values
matchValues-method | Matching of numeric values
metadata-method | Compound Annotation Sources
metadata-method | Compound Annotation Sources for 'CompDb' databases
Mz2MassParam | Matching of numeric values
Mz2MassRtParam | Matching of numeric values
MzParam | Matching of numeric values
MzRtParam | Matching of numeric values
plotSpectraMirror-method | Representation of Spectra matches
pruneTarget | Representation of generic objects matches
query-method | Representation of generic objects matches
queryIndex | Representation of generic objects matches
queryVariables | Representation of generic objects matches
queryVariables-method | Representation of generic objects matches
queryVariables-method | Representation of Spectra matches
ScoreThresholdParam | Representation of generic objects matches
scoreVariables | Representation of generic objects matches
SelectMatchesParam | Representation of generic objects matches
setBackend-method | Representation of Spectra matches
show-method | Compound Annotation Sources
show-method | Compound Annotation Sources for 'CompDb' databases
show-method | Representation of generic objects matches
SingleMatchParam | Representation of generic objects matches
spectraData-method | Representation of Spectra matches
spectraVariables-method | Representation of Spectra matches
target | Representation of generic objects matches
targetIndex | Representation of generic objects matches
targetVariables | Representation of generic objects matches
targetVariables-method | Representation of generic objects matches
targetVariables-method | Representation of Spectra matches
TopRankedMatchesParam | Representation of generic objects matches
validateMatchedSpectra | Validating MatchedSpectra
ValueParam | Matching of numeric values
whichQuery | Representation of generic objects matches
whichTarget | Representation of generic objects matches
[-method | Representation of generic objects matches