Package: MetCirc
Type: Package
Title: Navigating mass spectral similarity in high-resolution MS/MS
        metabolomics data metabolomics data
Version: 1.40.0
Date: 2024-10-16
Authors@R: c(person(given = "Thomas", family = "Naake",
    email = "thomasnaake@googlemail.com",
    role = c("aut","cre")),
  person(given = "Johannes", family = "Rainer",
    email = "johannes.rainer@eurac.edu",
    role = "ctb"),
  person(given = "Emmanuel", family = "Gaquerel",
    email = "emmanuel.gaquerel@ibmp-cnrs.unistra.fr", role = "aut"))
Author: Thomas Naake <thomasnaake@googlemail.com>, Johannes Rainer
        <johannes.rainer@eurac.edu> and Emmanuel Gaquerel
        <emmanuel.gaquerel@ibmp-cnrs.unistra.fr>
Maintainer: Thomas Naake <thomasnaake@googlemail.com>
VignetteBuilder: knitr
Depends: R (>= 4.4), amap (>= 0.8), circlize (>= 0.4.16), scales (>=
        1.3.0), shiny (>= 1.8.1.1), Spectra (>= 1.15.3)
Imports: ggplot2 (>= 3.5.1), MsCoreUtils (>= 1.17.0), S4Vectors (>=
        0.43.1)
Suggests: BiocGenerics, graphics (>= 4.4), grDevices (>= 4.4), knitr
        (>= 1.48), testthat (>= 3.2.1.1)
biocViews: ShinyApps, Metabolomics, MassSpectrometry, Visualization
Description: MetCirc comprises a workflow to interactively explore
        high-resolution MS/MS metabolomics data. MetCirc uses the
        Spectra object infrastructure defined in the package Spectra
        that stores MS/MS spectra. MetCirc offers functionality to
        calculate similarity between precursors based on the normalised
        dot product, neutral losses or user-defined functions and
        visualise similarities in a circular layout. Within the
        interactive framework the user can annotate MS/MS features
        based on their similarity to (known) related MS/MS features.
License: GPL (>= 3)
RoxygenNote: 7.2.2
Config/pak/sysreqs: make zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:32:46 UTC
RemoteUrl: https://github.com/bioc/MetCirc
RemoteRef: RELEASE_3_22
RemoteSha: 59436a4c85a4dee4fb565d71859f365deb0a317b
NeedsCompilation: no
Packaged: 2026-02-03 08:20:40 UTC; root
Built: R 4.5.2; ; 2026-02-03 08:22:28 UTC; windows
