Package: MLP
Maintainer: Tobias Verbeke <tobias.verbeke@openanalytics.eu>
License: GPL-3
Title: Mean Log P Analysis
Type: Package
Authors@R: c(
  person(given = "Nandini", family = "Raghavan", role = "aut"),
  person(given = "Tobias", family = "Verbeke", role = "aut", email = "tobias.verbeke@openanalytics.eu"),
  person(given = "An", family = "De Bondt", role = "aut"),
  person(given = "Javier", family = "Cabrera", role = "ctb"),
  person(given = "Dhammika", family = "Amaratunga", role = "ctb"),
  person(given = "Tine", family = "Casneuf", role = "ctb"),
  person(given = "Willem", family = "Ligtenberg", role = "ctb"),
  person(given = "Laure", family = "Cougnaud", role = "cre", email = "laure.cougnaud@openanalytics.eu"),
  person(given = "Katarzyna", family = "Gorczak", role = "ctb", email = "katarzyna.gorczak@openanalytics.eu")
 )
Description: Pathway analysis based on p-values associated to genes
        from a genes expression analysis of interest. Utility functions
        enable to extract pathways from the Gene Ontology Biological
        Process (GOBP), Molecular Function (GOMF) and Cellular
        Component (GOCC), Kyoto Encyclopedia of Genes of Genomes (KEGG)
        and Reactome databases. Methodology, and helper functions to
        display the results as a table, barplot of pathway
        significance, Gene Ontology graph and pathway significance are
        available.
Version: 1.58.0
biocViews: Genetics, GeneExpression, Pathways, Reactome, KEGG, GO
Date: 2025-04-22
Imports: AnnotationDbi, gplots, graphics, stats, utils
Suggests: GO.db, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db,
        org.Cf.eg.db, org.Mmu.eg.db, KEGGREST, annotate, Rgraphviz,
        GOstats, graph, limma, mouse4302.db, reactome.db
Collate: 'addGeneSetDescription.R' 'getGeneSets.R' 'mlpBarplot.R'
        'MLP.R' 'plotGeneSetSignificance.R' 'plotGOgraph.R'
        'plot.MLP.R' 'plotQuantileCurves.R' 'utils.R'
RoxygenNote: 7.3.2
Config/pak/sysreqs: libpng-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:06:15 UTC
RemoteUrl: https://github.com/bioc/MLP
RemoteRef: RELEASE_3_22
RemoteSha: 10c71614b01726510703fd1c348c24daad61b36e
NeedsCompilation: no
Packaged: 2026-02-02 08:50:49 UTC; root
Author: Nandini Raghavan [aut],
  Tobias Verbeke [aut],
  An De Bondt [aut],
  Javier Cabrera [ctb],
  Dhammika Amaratunga [ctb],
  Tine Casneuf [ctb],
  Willem Ligtenberg [ctb],
  Laure Cougnaud [cre],
  Katarzyna Gorczak [ctb]
Built: R 4.5.2; ; 2026-02-02 08:54:17 UTC; windows
