!,CompressedList-method	CompressedList-class
%outside%	findOverlaps-methods
%over%	findOverlaps-methods
%within%	findOverlaps-methods
active	MaskCollection-class
active,MaskCollection-method	MaskCollection-class
active<-	MaskCollection-class
active<-,MaskCollection-method	MaskCollection-class
all,CompressedAtomicList-method	AtomicList-summarization
all,CompressedRleList-method	AtomicList-summarization
any,CompressedAtomicList-method	AtomicList-summarization
anyNA,CompressedAtomicList-method	AtomicList-summarization
append,MaskCollection,MaskCollection-method	MaskCollection-class
as.character,IPosRanges-method	IPosRanges-class
as.data.frame,IPos-method	IPos-class
as.data.frame,IPosRanges-method	IPosRanges-class
as.data.frame.IPos	IPos-class
as.data.frame.IPosRanges	IPosRanges-class
as.env,SDFLWrapperForTransform-method	DataFrameList-class
as.factor,IPosRanges-method	IPosRanges-class
as.list,CompressedAtomicList-method	AtomicList-class
as.list,CompressedNormalIRangesList-method	IRangesList-class
as.list,Hits-method	Hits-class-leftovers
as.list,SortedByQueryHits-method	Hits-class-leftovers
as.matrix,AtomicList-method	AtomicList-class
as.matrix,CompressedHitsList-method	CompressedHitsList-class
as.matrix,IPosRanges-method	IPosRanges-class
as.matrix,Views-method	Views-class
as.matrix,ViewsList-method	ViewsList-class
as.vector,AtomicList-method	AtomicList-class
asNormalIRanges	IRanges-utils
AtomicList	AtomicList-class
AtomicList-class	AtomicList-class
AtomicList-summarization	AtomicList-summarization
AtomicList-utils	AtomicList-utils
AtomicList_summarization	AtomicList-summarization
AtomicList_utils	AtomicList-utils
bindROWS,CompressedList-method	CompressedList-class
bindROWS,IPos-method	IPos-class
bindROWS,NCList-method	NCList-class
bindROWS,Partitioning-method	Grouping-class
bindROWS,Views-method	Views-class
breakInChunks	IRanges-utils
cbind,DataFrameList-method	DataFrameList-class
CharacterList	AtomicList-class
CharacterList-class	AtomicList-class
chartr,ANY,ANY,CompressedCharacterList-method	AtomicList-utils
chartr,ANY,ANY,CompressedRleList-method	AtomicList-utils
chartr,ANY,ANY,SimpleCharacterList-method	AtomicList-utils
chartr,ANY,ANY,SimpleRleList-method	AtomicList-utils
class:AtomicList	AtomicList-class
class:CharacterList	AtomicList-class
class:ComplexList	AtomicList-class
class:CompressedAtomicList	AtomicList-class
class:CompressedCharacterList	AtomicList-class
class:CompressedComplexList	AtomicList-class
class:CompressedDataFrameList	DataFrameList-class
class:CompressedDFrameList	DataFrameList-class
class:CompressedFactorList	AtomicList-class
class:CompressedGrouping	Grouping-class
class:CompressedHitsList	CompressedHitsList-class
class:CompressedIntegerList	AtomicList-class
class:CompressedIRangesList	IRangesList-class
class:CompressedList	CompressedList-class
class:CompressedLogicalList	AtomicList-class
class:CompressedManyToManyGrouping	Grouping-class
class:CompressedManyToOneGrouping	Grouping-class
class:CompressedNormalIRangesList	IRangesList-class
class:CompressedNumericList	AtomicList-class
class:CompressedRawList	AtomicList-class
class:CompressedRleList	AtomicList-class
class:CompressedSplitDataFrameList	DataFrameList-class
class:CompressedSplitDFrameList	DataFrameList-class
class:DataFrameList	DataFrameList-class
class:DFrameList	DataFrameList-class
class:Dups	Grouping-class
class:FactorList	AtomicList-class
class:Grouping	Grouping-class
class:GroupingIRanges	Grouping-class
class:GroupingRanges	Grouping-class
class:H2LGrouping	Grouping-class
class:IntegerList	AtomicList-class
class:IntegerRanges	IntegerRanges-class
class:IntegerRangesList	IntegerRangesList-class
class:IntegerRanges_OR_missing	nearest-methods
class:IPos	IPos-class
class:IPosRanges	IPosRanges-class
class:IRanges	IRanges-class
class:IRangesList	IRangesList-class
class:LogicalList	AtomicList-class
class:ManyToManyGrouping	Grouping-class
class:ManyToOneGrouping	Grouping-class
class:MaskCollection	MaskCollection-class
class:NCList	NCList-class
class:NCLists	NCList-class
class:NormalIRanges	IRanges-class
class:NormalIRangesList	IRangesList-class
class:NumericList	AtomicList-class
class:Partitioning	Grouping-class
class:PartitioningByEnd	Grouping-class
class:PartitioningByWidth	Grouping-class
class:PartitioningMap	Grouping-class
class:RawList	AtomicList-class
class:RleList	AtomicList-class
class:RleViews	RleViews-class
class:SimpleAtomicList	AtomicList-class
class:SimpleCharacterList	AtomicList-class
class:SimpleComplexList	AtomicList-class
class:SimpleDataFrameList	DataFrameList-class
class:SimpleDFrameList	DataFrameList-class
class:SimpleFactorList	AtomicList-class
class:SimpleGrouping	Grouping-class
class:SimpleIntegerList	AtomicList-class
class:SimpleIntegerRangesList	IntegerRangesList-class
class:SimpleIRangesList	IRangesList-class
class:SimpleLogicalList	AtomicList-class
class:SimpleManyToManyGrouping	Grouping-class
class:SimpleManyToOneGrouping	Grouping-class
class:SimpleNormalIRangesList	IRangesList-class
class:SimpleNumericList	AtomicList-class
class:SimpleRawList	AtomicList-class
class:SimpleRleList	AtomicList-class
class:SimpleSplitDataFrameList	DataFrameList-class
class:SimpleSplitDFrameList	DataFrameList-class
class:SimpleViewsList	ViewsList-class
class:SplitDataFrameList	DataFrameList-class
class:SplitDFrameList	DataFrameList-class
class:StitchedIPos	IPos-class
class:UnstitchedIPos	IPos-class
class:Views	Views-class
class:ViewsList	ViewsList-class
classNameForDisplay,CompressedDFrameList-method	DataFrameList-class
classNameForDisplay,CompressedList-method	CompressedList-class
classNameForDisplay,SimpleDFrameList-method	DataFrameList-class
coerce,ANY,CompressedDataFrameList-method	DataFrameList-class
coerce,ANY,CompressedList-method	CompressedList-class
coerce,ANY,CompressedSplitDataFrameList-method	DataFrameList-class
coerce,ANY,CompressedSplitDFrameList-method	DataFrameList-class
coerce,ANY,DataFrameList-method	DataFrameList-class
coerce,ANY,IntegerRanges-method	IRanges-class
coerce,ANY,IPos-method	IPos-class
coerce,ANY,SimpleDataFrameList-method	DataFrameList-class
coerce,ANY,SimpleSplitDataFrameList-method	DataFrameList-class
coerce,ANY,SimpleSplitDFrameList-method	DataFrameList-class
coerce,ANY,SplitDataFrameList-method	DataFrameList-class
coerce,ANY,SplitDFrameList-method	DataFrameList-class
coerce,ANY,StitchedIPos-method	IPos-class
coerce,ANY,UnstitchedIPos-method	IPos-class
coerce,ANY,vector-method	IRanges-internals
coerce,AtomicList,CharacterList-method	AtomicList-class
coerce,AtomicList,ComplexList-method	AtomicList-class
coerce,AtomicList,IntegerList-method	AtomicList-class
coerce,AtomicList,LogicalList-method	AtomicList-class
coerce,AtomicList,NumericList-method	AtomicList-class
coerce,AtomicList,RawList-method	AtomicList-class
coerce,AtomicList,RleList-method	AtomicList-class
coerce,AtomicList,RleViews	AtomicList-class
coerce,character,IRanges-method	IRanges-class
coerce,CompressedAtomicList,list-method	AtomicList-class
coerce,CompressedIRangesList,CompressedNormalIRangesList-method	IRangesList-class
coerce,CompressedRleList,CompressedIRangesList-method	IRangesList-class
coerce,data.frame,IRanges-method	makeIRangesFromDataFrame
coerce,DataFrame,Grouping-method	Grouping-class
coerce,DataFrame,IRanges-method	makeIRangesFromDataFrame
coerce,DataFrame,SplitDFrameList-method	DataFrameList-class
coerce,DataFrameList,DFrame-method	DataFrameList-class
coerce,factor,IRanges-method	IRanges-class
coerce,FactorList,Grouping-method	Grouping-class
coerce,grouping,Grouping-method	Grouping-class
coerce,grouping,ManyToOneGrouping-method	Grouping-class
coerce,Hits,CompressedIntegerList-method	Hits-class-leftovers
coerce,Hits,Grouping	Hits-class-leftovers
coerce,Hits,Grouping-method	Grouping-class
coerce,Hits,IntegerList-method	Hits-class-leftovers
coerce,Hits,List-method	Hits-class-leftovers
coerce,integer,IRanges-method	IRanges-class
coerce,integer,NormalIRanges-method	IRanges-class
coerce,IntegerRanges,CompressedIRangesList-method	IRangesList-class
coerce,IntegerRanges,IPos-method	IPos-class
coerce,IntegerRanges,IRanges-method	IRanges-class
coerce,IntegerRanges,NCList-method	NCList-class
coerce,IntegerRanges,PartitioningByEnd-method	Grouping-class
coerce,IntegerRanges,PartitioningByWidth-method	Grouping-class
coerce,IntegerRanges,StitchedIPos-method	IPos-class
coerce,IntegerRanges,UnstitchedIPos-method	IPos-class
coerce,IntegerRangesList,CompressedNormalIRangesList-method	IRangesList-class
coerce,IntegerRangesList,NCLists-method	NCList-class
coerce,IntegerRangesList,NormalIRangesList-method	IRangesList-class
coerce,IntegerRangesList,RangedSelection-method	RangedSelection-class
coerce,IntegerRangesList,SimpleIRangesList-method	IRangesList-class
coerce,IntegerRangesList,SimpleNormalIRangesList-method	IRangesList-class
coerce,IRanges,NormalIRanges-method	IRanges-utils
coerce,List,CompressedIRangesList-method	IRangesList-class
coerce,list,CompressedIRangesList-method	IRangesList-class
coerce,List,CompressedSplitDFrameList-method	DataFrameList-class
coerce,List,IRangesList-method	IRangesList-class
coerce,list,IRangesList-method	IRangesList-class
coerce,List,SimpleIRangesList-method	IRangesList-class
coerce,list,SimpleIRangesList-method	IRangesList-class
coerce,List,SimpleSplitDFrameList-method	DataFrameList-class
coerce,list,SplitDFrameList-method	DataFrameList-class
coerce,logical,IRanges-method	IRanges-class
coerce,logical,NormalIRanges-method	IRanges-class
coerce,LogicalList,CompressedNormalIRangesList-method	IRangesList-class
coerce,LogicalList,NormalIRangesList-method	IRangesList-class
coerce,LogicalList,SimpleNormalIRangesList-method	IRangesList-class
coerce,ManyToOneGrouping,factor-method	Grouping-class
coerce,MaskCollection,NormalIRanges-method	MaskCollection-class
coerce,NCLists,CompressedIRangesList-method	NCList-class
coerce,NCLists,IRangesList-method	NCList-class
coerce,NormalIRangesList,CompressedNormalIRangesList-method	IRangesList-class
coerce,numeric,IRanges-method	IRanges-class
coerce,numeric,NormalIRanges-method	IRanges-class
coerce,Rle,IRanges-method	Rle-class-leftovers
coerce,Rle,NormalIRanges-method	Rle-class-leftovers
coerce,RleList,CompressedNormalIRangesList-method	IRangesList-class
coerce,RleList,NormalIRangesList-method	IRangesList-class
coerce,RleList,SimpleNormalIRangesList-method	IRangesList-class
coerce,RleViewsList,IRangesList-method	RleViewsList-class
coerce,RleViewsList,SimpleIRangesList-method	RleViewsList-class
coerce,SimpleIntegerRangesList,SimpleIRangesList-method	IRangesList-class
coerce,SimpleIRangesList,SimpleNormalIRangesList-method	IRangesList-class
coerce,SimpleList,SimpleIRangesList-method	IRangesList-class
coerce,SimpleList,SplitDFrameList-method	DataFrameList-class
coerce,SortedByQueryHits,CompressedIntegerList-method	Hits-class-leftovers
coerce,SortedByQueryHits,IntegerList-method	Hits-class-leftovers
coerce,SortedByQueryHits,IntegerRanges-method	Hits-class-leftovers
coerce,SortedByQueryHits,IRanges-method	Hits-class-leftovers
coerce,SortedByQueryHits,List-method	Hits-class-leftovers
coerce,SortedByQueryHits,Partitioning-method	Hits-class-leftovers
coerce,SortedByQueryHits,PartitioningByEnd-method	Hits-class-leftovers
coerce,SplitDataFrameList,DFrame-method	DataFrameList-class
coerce,StitchedIPos,UnstitchedIPos-method	IPos-class
coerce,UnstitchedIPos,StitchedIPos-method	IPos-class
coerce,vector,AtomicList-method	AtomicList-class
coerce,vector,CompressedCharacterList-method	AtomicList-class
coerce,vector,CompressedComplexList-method	AtomicList-class
coerce,vector,CompressedIntegerList-method	AtomicList-class
coerce,vector,CompressedLogicalList-method	AtomicList-class
coerce,vector,CompressedNumericList-method	AtomicList-class
coerce,vector,CompressedRawList-method	AtomicList-class
coerce,vector,CompressedRleList-method	AtomicList-class
coerce,vector,Grouping-method	Grouping-class
coerce,vector,ManyToManyGrouping-method	Grouping-class
coerce,vector,ManyToOneGrouping-method	Grouping-class
coerce,vector,SimpleCharacterList-method	AtomicList-class
coerce,vector,SimpleComplexList-method	AtomicList-class
coerce,vector,SimpleIntegerList-method	AtomicList-class
coerce,vector,SimpleLogicalList-method	AtomicList-class
coerce,vector,SimpleNumericList-method	AtomicList-class
coerce,vector,SimpleRawList-method	AtomicList-class
coerce,vector,SimpleRleList-method	AtomicList-class
coerce,Vector,Views-method	Views-class
coerce,Views,IntegerRanges-method	Views-class
coerce,Views,IRanges-method	Views-class
coerce,Views,NormalIRanges-method	Views-class
collapse	MaskCollection-class
collapse,MaskCollection-method	MaskCollection-class
colnames,CompressedSplitDataFrameList-method	DataFrameList-class
colnames,DataFrameList-method	DataFrameList-class
colnames,RangedSelection-method	RangedSelection-class
colnames,SDFLWrapperForTransform-method	DataFrameList-class
colnames,SplitDataFrameList-method	DataFrameList-class
colnames<-,CompressedSplitDataFrameList-method	DataFrameList-class
colnames<-,RangedSelection-method	RangedSelection-class
colnames<-,SimpleDataFrameList-method	DataFrameList-class
columnMetadata	DataFrameList-class
columnMetadata,CompressedSplitDataFrameList-method	DataFrameList-class
columnMetadata,SimpleSplitDataFrameList-method	DataFrameList-class
columnMetadata<-	DataFrameList-class
columnMetadata<-,CompressedSplitDataFrameList-method	DataFrameList-class
columnMetadata<-,SimpleSplitDataFrameList-method	DataFrameList-class
commonColnames	DataFrameList-class
commonColnames,CompressedSplitDataFrameList-method	DataFrameList-class
commonColnames,SimpleSplitDataFrameList-method	DataFrameList-class
commonColnames<-	DataFrameList-class
commonColnames<-,CompressedSplitDataFrameList-method	DataFrameList-class
commonColnames<-,SimpleSplitDataFrameList-method	DataFrameList-class
Complex,AtomicList-method	AtomicList-utils
Complex,CompressedAtomicList-method	AtomicList-utils
ComplexList	AtomicList-class
ComplexList-class	AtomicList-class
CompressedAtomicList	AtomicList-class
CompressedAtomicList-class	AtomicList-class
CompressedCharacterList	AtomicList-class
CompressedCharacterList-class	AtomicList-class
CompressedComplexList	AtomicList-class
CompressedComplexList-class	AtomicList-class
CompressedDataFrameList	DataFrameList-class
CompressedDataFrameList-class	DataFrameList-class
CompressedDFrameList	DataFrameList-class
CompressedDFrameList-class	DataFrameList-class
CompressedFactorList	AtomicList-class
CompressedFactorList-class	AtomicList-class
CompressedGrouping-class	Grouping-class
CompressedHitsList	CompressedHitsList-class
CompressedHitsList-class	CompressedHitsList-class
CompressedIntegerList	AtomicList-class
CompressedIntegerList-class	AtomicList-class
CompressedIRangesList	IRangesList-class
CompressedIRangesList-class	IRangesList-class
CompressedList	CompressedList-class
CompressedList-class	CompressedList-class
CompressedLogicalList	AtomicList-class
CompressedLogicalList-class	AtomicList-class
CompressedManyToManyGrouping-class	Grouping-class
CompressedManyToOneGrouping-class	Grouping-class
CompressedNormalIRangesList	IRangesList-class
CompressedNormalIRangesList-class	IRangesList-class
CompressedNumericList	AtomicList-class
CompressedNumericList-class	AtomicList-class
CompressedRawList	AtomicList-class
CompressedRawList-class	AtomicList-class
CompressedRleList	AtomicList-class
CompressedRleList-class	AtomicList-class
CompressedSplitDataFrameList	DataFrameList-class
CompressedSplitDataFrameList-class	DataFrameList-class
CompressedSplitDFrameList	DataFrameList-class
CompressedSplitDFrameList-class	DataFrameList-class
cor,AtomicList,AtomicList-method	AtomicList-summarization
countOverlaps	findOverlaps-methods
countOverlaps,integer,Vector-method	findOverlaps-methods
countOverlaps,IntegerRanges,IntegerRanges-method	findOverlaps-methods
countOverlaps,IntegerRangesList,IntegerRangesList-method	findOverlaps-methods
countOverlaps,Vector,missing-method	findOverlaps-methods
countOverlaps,Vector,Vector-method	findOverlaps-methods
cov,AtomicList,AtomicList-method	AtomicList-summarization
coverage	coverage-methods
coverage,IntegerRanges-method	coverage-methods
coverage,IntegerRangesList-method	coverage-methods
coverage,StitchedIPos-method	coverage-methods
coverage,Views-method	coverage-methods
coverage-methods	coverage-methods
cummax,CompressedAtomicList-method	AtomicList-utils
cummin,CompressedAtomicList-method	AtomicList-utils
cumprod,CompressedAtomicList-method	AtomicList-utils
cumsum,CompressedAtomicList-method	AtomicList-utils
DataFrameList	DataFrameList-class
DataFrameList-class	DataFrameList-class
desc	MaskCollection-class
desc,MaskCollection-method	MaskCollection-class
desc<-	MaskCollection-class
desc<-,MaskCollection-method	MaskCollection-class
DFrameList	DataFrameList-class
DFrameList-class	DataFrameList-class
diff,CompressedAtomicList-method	AtomicList-utils
diff.AtomicList	AtomicList-utils
dim,DataFrameList-method	DataFrameList-class
dimnames,DataFrameList-method	DataFrameList-class
dimnames<-,DataFrameList-method	DataFrameList-class
dims,DataFrameList-method	DataFrameList-class
disjoin	inter-range-methods
disjoin,CompressedIRangesList-method	inter-range-methods
disjoin,IntegerRanges-method	inter-range-methods
disjoin,IntegerRangesList-method	inter-range-methods
disjoin,NormalIRanges-method	inter-range-methods
disjointBins	inter-range-methods
disjointBins,IntegerRanges-method	inter-range-methods
disjointBins,IntegerRangesList-method	inter-range-methods
disjointBins,NormalIRanges-method	inter-range-methods
distance	nearest-methods
distance,IntegerRanges,IntegerRanges-method	nearest-methods
distance,Pairs,missing-method	nearest-methods
distanceToNearest	nearest-methods
distanceToNearest,IntegerRanges,IntegerRanges_OR_missing-method	nearest-methods
drop,AtomicList-method	AtomicList-class
duplicated,CompressedAtomicList-method	AtomicList-class
duplicated,CompressedList-method	AtomicList-class
duplicated,Dups-method	Grouping-class
Dups	Grouping-class
Dups-class	Grouping-class
elementNROWS,CompressedList-method	CompressedList-class
elementNROWS,NCLists-method	NCList-class
elementNROWS,Ranges-method	IPosRanges-class
end,CompressedRangesList-method	IRangesList-class
end,NCList-method	NCList-class
end,NCLists-method	NCList-class
end,PartitioningByEnd-method	Grouping-class
end,PartitioningByWidth-method	Grouping-class
end,Pos-method	IPosRanges-class
end,Ranges-method	IPosRanges-class
end,RangesList-method	IntegerRangesList-class
end,SimpleViewsList-method	ViewsList-class
end<-	IPosRanges-class
end<-,IntegerRangesList-method	IntegerRangesList-class
end<-,IRanges-method	IRanges-class
end<-,Views-method	Views-class
endsWith,CharacterList,ANY-method	AtomicList-utils
endsWith,RleList,ANY-method	AtomicList-utils
equisplit	extractListFragments
eval	Vector-class-leftovers
eval,expression,Vector-method	Vector-class-leftovers
eval,language,Vector-method	Vector-class-leftovers
extractList	extractList
extractList,ANY,ANY-method	extractList
extractList,ANY-method	extractList
extractListFragments	extractListFragments
extractROWS,IPos-method	IPos-class
extractROWS,NCList,ANY-method	NCList-class
extractROWS,Partitioning-method	Grouping-class
FactorList	AtomicList-class
FactorList-class	AtomicList-class
findOverlapPairs	findOverlaps-methods
findOverlaps	findOverlaps-methods
findOverlaps,ANY,Pairs-method	findOverlaps-methods
findOverlaps,integer,IntegerRanges-method	findOverlaps-methods
findOverlaps,IntegerRanges,IntegerRanges-method	findOverlaps-methods
findOverlaps,IntegerRangesList,IntegerRangesList-method	findOverlaps-methods
findOverlaps,Pairs,ANY-method	findOverlaps-methods
findOverlaps,Pairs,missing-method	findOverlaps-methods
findOverlaps,Pairs,Pairs-method	findOverlaps-methods
findOverlaps,Vector,missing-method	findOverlaps-methods
findOverlaps-methods	findOverlaps-methods
findRange	Rle-class-leftovers
findRange,Rle-method	Rle-class-leftovers
flank	intra-range-methods
flank,Ranges-method	intra-range-methods
flank,RangesList-method	intra-range-methods
follow	nearest-methods
follow,IntegerRanges,IntegerRanges_OR_missing-method	nearest-methods
from,CompressedHitsList-method	CompressedHitsList-class
gaps	inter-range-methods
gaps,CompressedIRangesList-method	inter-range-methods
gaps,IntegerRanges-method	inter-range-methods
gaps,IntegerRangesList-method	inter-range-methods
gaps,MaskCollection-method	inter-range-methods
gaps,Views-method	inter-range-methods
getListElement,IPosRanges-method	IPosRanges-class
Grouping	Grouping-class
Grouping-class	Grouping-class
GroupingIRanges	Grouping-class
GroupingIRanges-class	Grouping-class
GroupingRanges	Grouping-class
GroupingRanges-class	Grouping-class
grouplengths	Grouping-class
grouplengths,CompressedGrouping-method	Grouping-class
grouplengths,Grouping-method	Grouping-class
grouplengths,GroupingRanges-method	Grouping-class
grouplengths,H2LGrouping-method	Grouping-class
grouprank	Grouping-class
grouprank,H2LGrouping-method	Grouping-class
gsub,ANY,ANY,CompressedCharacterList-method	AtomicList-utils
gsub,ANY,ANY,CompressedRleList-method	AtomicList-utils
gsub,ANY,ANY,SimpleCharacterList-method	AtomicList-utils
gsub,ANY,ANY,SimpleRleList-method	AtomicList-utils
H2LGrouping	Grouping-class
H2LGrouping-class	Grouping-class
high2low	Grouping-class
high2low,ANY-method	Grouping-class
high2low,H2LGrouping-method	Grouping-class
Hits-examples	Hits-class-leftovers
ifelse2	AtomicList-utils
ifelse2,ANY,ANY,List-method	AtomicList-utils
ifelse2,ANY,List,ANY-method	AtomicList-utils
ifelse2,CompressedLogicalList,ANY,ANY-method	AtomicList-utils
ifelse2,CompressedLogicalList,ANY,List-method	AtomicList-utils
ifelse2,CompressedLogicalList,List,ANY-method	AtomicList-utils
ifelse2,CompressedLogicalList,List,List-method	AtomicList-utils
ifelse2,List,ANY,ANY-method	AtomicList-utils
ifelse2,SimpleLogicalList,ANY,ANY-method	AtomicList-utils
ifelse2,SimpleLogicalList,ANY,List-method	AtomicList-utils
ifelse2,SimpleLogicalList,List,ANY-method	AtomicList-utils
ifelse2,SimpleLogicalList,List,List-method	AtomicList-utils
INCOMPATIBLE_ARANGES_MSG	extractListFragments
IntegerList	AtomicList-class
IntegerList-class	AtomicList-class
IntegerRanges	IntegerRanges-class
IntegerRanges-class	IntegerRanges-class
IntegerRangesList	IntegerRangesList-class
IntegerRangesList-class	IntegerRangesList-class
IntegerRanges_OR_missing	nearest-methods
IntegerRanges_OR_missing-class	nearest-methods
inter-range-methods	inter-range-methods
intersect	setops-methods
intersect,CompressedAtomicList,CompressedAtomicList-method	AtomicList-utils
intersect,CompressedIRangesList,CompressedIRangesList-method	setops-methods
intersect,IntegerRanges,IntegerRanges-method	setops-methods
intersect,IntegerRangesList,IntegerRangesList-method	setops-methods
intersect,Pairs,missing-method	setops-methods
intra-range-methods	intra-range-methods
IPos	IPos-class
IPos-class	IPos-class
IPosRanges	IPosRanges-class
IPosRanges-class	IPosRanges-class
IPosRanges-comparison	IPosRanges-comparison
IQR,AtomicList-method	AtomicList-summarization
IRanges	IRanges-constructor
IRanges-class	IRanges-class
IRanges-constructor	IRanges-constructor
IRanges-utils	IRanges-utils
IRangesList	IRangesList-class
IRangesList-class	IRangesList-class
is.na,CompressedList-method	CompressedList-class
is.unsorted,IPosRanges-method	IPosRanges-comparison
isDisjoint	inter-range-methods
isDisjoint,IntegerRanges-method	inter-range-methods
isDisjoint,IntegerRangesList-method	inter-range-methods
isDisjoint,NormalIRanges-method	inter-range-methods
isDisjoint,StitchedIPos-method	inter-range-methods
isEmpty,NormalIRanges-method	IRanges-class
isEmpty,Ranges-method	IPosRanges-class
isNormal	IPosRanges-class
isNormal,CompressedIRangesList-method	IRangesList-class
isNormal,IntegerRangesList-method	IntegerRangesList-class
isNormal,IRanges-method	IRanges-class
isNormal,NormalIRanges-method	IRanges-class
isNormal,Ranges-method	IPosRanges-class
isNormal,SimpleIRangesList-method	IRangesList-class
lapply,CompressedAtomicList-method	AtomicList-class
lapply,CompressedList-method	CompressedList-class
length,CompressedList-method	CompressedList-class
length,H2LGrouping-method	Grouping-class
length,IPos-method	IPos-class
length,MaskCollection-method	MaskCollection-class
length,NCList-method	NCList-class
length,NCLists-method	NCList-class
length,PartitioningByEnd-method	Grouping-class
length,PartitioningByWidth-method	Grouping-class
length,Ranges-method	IPosRanges-class
length,UnstitchedIPos-method	IPos-class
length<-,H2LGrouping-method	Grouping-class
LogicalList	AtomicList-class
LogicalList-class	AtomicList-class
low2high	Grouping-class
low2high,H2LGrouping-method	Grouping-class
mad,AtomicList-method	AtomicList-summarization
makeIRangesFromDataFrame	makeIRangesFromDataFrame
ManyToManyGrouping	Grouping-class
ManyToManyGrouping-class	Grouping-class
ManyToOneGrouping	Grouping-class
ManyToOneGrouping-class	Grouping-class
mapOrder	Grouping-class
mapOrder,PartitioningMap-method	Grouping-class
Mask	MaskCollection-class
MaskCollection	MaskCollection-class
MaskCollection-class	MaskCollection-class
MaskCollection.show_frame	MaskCollection-class
maskedratio	MaskCollection-class
maskedratio,MaskCollection-method	MaskCollection-class
maskedwidth	MaskCollection-class
maskedwidth,MaskCollection-method	MaskCollection-class
match,CompressedList,vector-method	CompressedList-class
match,IPosRanges,IPosRanges-method	IPosRanges-comparison
Math,AtomicList-method	AtomicList-utils
Math,CompressedAtomicList-method	AtomicList-utils
Math2,AtomicList-method	AtomicList-utils
Math2,CompressedAtomicList-method	AtomicList-utils
max,CompressedNormalIRangesList-method	IRangesList-class
max,MaskCollection-method	MaskCollection-class
max,NormalIRanges-method	IRanges-class
max,SimpleNormalIRangesList-method	IRangesList-class
max,Views-method	view-summarization-methods
mean,AtomicList-method	AtomicList-summarization
mean,CompressedIntegerList-method	AtomicList-summarization
mean,CompressedLogicalList-method	AtomicList-summarization
mean,CompressedNumericList-method	AtomicList-summarization
mean,CompressedRleList-method	AtomicList-summarization
mean,Views-method	view-summarization-methods
median,AtomicList-method	AtomicList-summarization
median,CompressedAtomicList-method	AtomicList-summarization
members	Grouping-class
members,H2LGrouping-method	Grouping-class
members,ManyToOneGrouping-method	Grouping-class
merge,IntegerRangesList,IntegerRangesList-method	IntegerRangesList-class
merge,IntegerRangesList,missing-method	IntegerRangesList-class
merge,missing,IntegerRangesList-method	IntegerRangesList-class
mergeByOverlaps	findOverlaps-methods
mid	IPosRanges-class
mid,Ranges-method	IPosRanges-class
min,CompressedNormalIRangesList-method	IRangesList-class
min,MaskCollection-method	MaskCollection-class
min,NormalIRanges-method	IRanges-class
min,SimpleNormalIRangesList-method	IRangesList-class
min,Views-method	view-summarization-methods
multisplit	multisplit
names,CompressedList-method	CompressedList-class
names,IPos-method	IPos-class
names,IRanges-method	IRanges-class
names,MaskCollection-method	MaskCollection-class
names,NCList-method	NCList-class
names,NCLists-method	NCList-class
names,Partitioning-method	Grouping-class
names,Views-method	Views-class
names<-,CompressedList-method	CompressedList-class
names<-,IPos-method	IPos-class
names<-,IRanges-method	IRanges-class
names<-,MaskCollection-method	MaskCollection-class
names<-,Partitioning-method	Grouping-class
names<-,Views-method	Views-class
narrow	intra-range-methods
narrow,ANY-method	intra-range-methods
narrow,MaskCollection-method	intra-range-methods
nchar,CompressedCharacterList-method	AtomicList-utils
nchar,CompressedRleList-method	AtomicList-utils
nchar,SimpleCharacterList-method	AtomicList-utils
nchar,SimpleRleList-method	AtomicList-utils
NCList	NCList-class
NCList-class	NCList-class
NCLists	NCList-class
NCLists-class	NCList-class
ncol,CompressedSplitDataFrameList-method	DataFrameList-class
ncol,DataFrameList-method	DataFrameList-class
ncol,SimpleSplitDataFrameList-method	DataFrameList-class
ncols,CompressedSplitDataFrameList-method	DataFrameList-class
ncols,DataFrameList-method	DataFrameList-class
ncols,SimpleSplitDataFrameList-method	DataFrameList-class
nearest	nearest-methods
nearest,IntegerRanges,IntegerRanges_OR_missing-method	nearest-methods
nearest-methods	nearest-methods
nir_list	MaskCollection-class
nir_list,MaskCollection-method	MaskCollection-class
nLnode,CompressedHitsList-method	CompressedHitsList-class
nobj	Grouping-class
nobj,BaseManyToManyGrouping-method	Grouping-class
nobj,CompressedManyToOneGrouping-method	Grouping-class
nobj,H2LGrouping-method	Grouping-class
nobj,ManyToManyGrouping-method	Grouping-class
nobj,ManyToOneGrouping-method	Grouping-class
nobj,PartitioningByEnd-method	Grouping-class
NormalIRanges	IRanges-class
NormalIRanges-class	IRanges-class
NormalIRangesList	IRangesList-class
NormalIRangesList-class	IRangesList-class
nRnode,CompressedHitsList-method	CompressedHitsList-class
NROW,DataFrameList-method	DataFrameList-class
nrow,DataFrameList-method	DataFrameList-class
nrows,DataFrameList-method	DataFrameList-class
NumericList	AtomicList-class
NumericList-class	AtomicList-class
Ops,atomic,AtomicList-method	AtomicList-utils
Ops,atomic,CompressedAtomicList-method	AtomicList-utils
Ops,AtomicList,atomic-method	AtomicList-utils
Ops,AtomicList,AtomicList-method	AtomicList-utils
Ops,AtomicList,missing-method	AtomicList-utils
Ops,CompressedAtomicList,atomic-method	AtomicList-utils
Ops,CompressedAtomicList,CompressedAtomicList-method	AtomicList-utils
Ops,CompressedAtomicList,SimpleAtomicList-method	AtomicList-utils
Ops,CompressedRangesList,numeric-method	intra-range-methods
Ops,Ranges,numeric-method	intra-range-methods
Ops,RangesList,numeric-method	intra-range-methods
Ops,SimpleAtomicList,CompressedAtomicList-method	AtomicList-utils
order,CompressedAtomicList-method	AtomicList-utils
order,IPosRanges-method	IPosRanges-comparison
order,List-method	AtomicList-class
overlapsAny	findOverlaps-methods
overlapsAny,integer,Vector-method	findOverlaps-methods
overlapsAny,IntegerRangesList,IntegerRangesList-method	findOverlaps-methods
overlapsAny,Vector,missing-method	findOverlaps-methods
overlapsAny,Vector,Vector-method	findOverlaps-methods
overlapsRanges	findOverlaps-methods
overlapsRanges,IntegerRanges,IntegerRanges-method	findOverlaps-methods
overlapsRanges,IntegerRangesList,IntegerRangesList-method	findOverlaps-methods
parallel_slot_names,IPos-method	IPos-class
parallel_slot_names,IRanges-method	IRanges-class
parallel_slot_names,NCLists-method	NCList-class
parallel_slot_names,Partitioning-method	Grouping-class
parallel_slot_names,PartitioningByEnd-method	Grouping-class
parallel_slot_names,PartitioningByWidth-method	Grouping-class
parallel_slot_names,UnstitchedIPos-method	IPos-class
parallel_slot_names,Views-method	Views-class
Partitioning	Grouping-class
Partitioning-class	Grouping-class
PartitioningByEnd	Grouping-class
PartitioningByEnd-class	Grouping-class
PartitioningByWidth	Grouping-class
PartitioningByWidth-class	Grouping-class
PartitioningMap	Grouping-class
PartitioningMap-class	Grouping-class
paste,CompressedAtomicList-method	AtomicList-utils
pcompare	IPosRanges-comparison
pcompare,IPosRanges,IPosRanges-method	IPosRanges-comparison
pgap	setops-methods
pgap,IntegerRanges,IntegerRanges-method	setops-methods
pintersect	setops-methods
pintersect,IntegerRanges,IntegerRanges-method	setops-methods
pintersect,Pairs,missing-method	setops-methods
pmax,IntegerList-method	AtomicList-utils
pmax,NumericList-method	AtomicList-utils
pmax,RleList-method	AtomicList-utils
pmax.int,IntegerList-method	AtomicList-utils
pmax.int,NumericList-method	AtomicList-utils
pmax.int,RleList-method	AtomicList-utils
pmin,IntegerList-method	AtomicList-utils
pmin,NumericList-method	AtomicList-utils
pmin,RleList-method	AtomicList-utils
pmin.int,IntegerList-method	AtomicList-utils
pmin.int,NumericList-method	AtomicList-utils
pmin.int,RleList-method	AtomicList-utils
pos	IPos-class
pos,CompressedPosList-method	IRangesList-class
pos,IPos-method	IPos-class
pos,PosList-method	IntegerRangesList-class
pos,UnstitchedIPos-method	IPos-class
poverlaps	findOverlaps-methods
poverlaps,integer,IntegerRanges-method	findOverlaps-methods
poverlaps,IntegerRanges,integer-method	findOverlaps-methods
poverlaps,IntegerRanges,IntegerRanges-method	findOverlaps-methods
precede	nearest-methods
precede,IntegerRanges,IntegerRanges_OR_missing-method	nearest-methods
promoters	intra-range-methods
promoters,IntegerRanges-method	intra-range-methods
promoters,RangesList-method	intra-range-methods
psetdiff	setops-methods
psetdiff,IntegerRanges,IntegerRanges-method	setops-methods
psetdiff,Pairs,missing-method	setops-methods
punion	setops-methods
punion,IntegerRanges,IntegerRanges-method	setops-methods
punion,Pairs,missing-method	setops-methods
quantile,AtomicList-method	AtomicList-summarization
range	inter-range-methods
range,CompressedIntegerList-method	AtomicList-summarization
range,CompressedIRangesList-method	inter-range-methods
range,CompressedLogicalList-method	AtomicList-summarization
range,CompressedNumericList-method	AtomicList-summarization
range,CompressedRleList-method	AtomicList-summarization
range,IntegerRanges-method	inter-range-methods
range,IntegerRangesList-method	inter-range-methods
range,StitchedIPos-method	inter-range-methods
range-squeezers	range-squeezers
rangeComparisonCodeToLetter	IPosRanges-comparison
RangedSelection	RangedSelection-class
RangedSelection-class	RangedSelection-class
ranges	range-squeezers
ranges,CompressedRleList-method	AtomicList-class
ranges,IntegerRanges-method	IRanges-class
ranges,NCLists-method	NCList-class
ranges,RangedSelection-method	RangedSelection-class
ranges,Rle-method	Rle-class-leftovers
ranges,RleList-method	AtomicList-class
ranges,SimpleViewsList-method	ViewsList-class
ranges,Views-method	Views-class
ranges<-	Views-class
ranges<-,RangedSelection-method	RangedSelection-class
ranges<-,Views-method	Views-class
rank,CompressedAtomicList-method	AtomicList-utils
rank,List-method	AtomicList-class
RawList	AtomicList-class
RawList-class	AtomicList-class
rbind,DataFrameList-method	DataFrameList-class
read.agpMask	read.Mask
read.gapMask	read.Mask
read.liftMask	read.Mask
read.Mask	read.Mask
read.rmMask	read.Mask
read.trfMask	read.Mask
reduce	inter-range-methods
reduce,CompressedIRangesList-method	inter-range-methods
reduce,IntegerRanges-method	inter-range-methods
reduce,IntegerRangesList-method	inter-range-methods
reduce,Views-method	inter-range-methods
reflect	intra-range-methods
reflect,IntegerRanges-method	intra-range-methods
regroup	extractList
relist	extractList
relist,ANY,List-method	extractList
relist,ANY,PartitioningByEnd-method	extractList
relist,Vector,list-method	extractList
resize	intra-range-methods
resize,Ranges-method	intra-range-methods
resize,RangesList-method	intra-range-methods
restrict	intra-range-methods
restrict,IntegerRanges-method	intra-range-methods
restrict,RangesList-method	intra-range-methods
restrict,Views-method	intra-range-methods
revElements,CompressedList-method	CompressedList-class
reverse	reverse-methods
reverse,character-method	reverse-methods
reverse,IRanges-method	reverse-methods
reverse,MaskCollection-method	reverse-methods
reverse,NormalIRanges-method	reverse-methods
reverse,Views-method	reverse-methods
rglist	range-squeezers
rglist,Pairs-method	range-squeezers
RleList	AtomicList-class
RleList,AtomicList,RleList-method	AtomicList-class
RleList-class	AtomicList-class
RleViews	RleViews-class
RleViews-class	RleViews-class
RleViewsList	RleViewsList-class
RleViewsList-class	RleViewsList-class
ROWNAMES,DataFrameList-method	DataFrameList-class
rownames,DataFrameList-method	DataFrameList-class
rownames<-,CompressedSplitDataFrameList-method	DataFrameList-class
ROWNAMES<-,DataFrameList-method	DataFrameList-class
rownames<-,SimpleDataFrameList-method	DataFrameList-class
runLength,CompressedRleList-method	AtomicList-class
runLength,RleList-method	AtomicList-class
runmean,RleList-method	AtomicList-utils
runmed,CompressedIntegerList-method	AtomicList-utils
runmed,NumericList-method	AtomicList-utils
runmed,RleList-method	AtomicList-utils
runmed,SimpleIntegerList-method	AtomicList-utils
runq,RleList-method	AtomicList-utils
runsum,RleList-method	AtomicList-utils
runValue,CompressedRleList-method	AtomicList-class
runValue,RleList-method	AtomicList-class
runValue<-,CompressedRleList-method	AtomicList-class
runValue<-,SimpleRleList-method	AtomicList-class
runwtsum,RleList-method	AtomicList-utils
sd,AtomicList-method	AtomicList-summarization
selectNearest	nearest-methods
selfmatch,CompressedAtomicList-method	AtomicList-utils
selfmatch,IPosRanges-method	IPosRanges-comparison
setdiff	setops-methods
setdiff,CompressedIRangesList,CompressedIRangesList-method	setops-methods
setdiff,IntegerRanges,IntegerRanges-method	setops-methods
setdiff,IntegerRangesList,IntegerRangesList-method	setops-methods
setdiff,Pairs,missing-method	setops-methods
setops-methods	setops-methods
shift	intra-range-methods
shift,IPos-method	intra-range-methods
shift,Ranges-method	intra-range-methods
shift,RangesList-method	intra-range-methods
show,AtomicList-method	AtomicList-class
show,Dups-method	Grouping-class
show,Grouping-method	Grouping-class
show,IntegerRangesList-method	IntegerRangesList-class
show,IPos-method	IPos-class
show,IPosRanges-method	IPosRanges-class
show,MaskCollection-method	MaskCollection-class
show,PartitioningMap-method	Grouping-class
show,RleList-method	AtomicList-class
show,RleViews-method	RleViews-class
show,SplitDataFrameList-method	DataFrameList-class
SimpleAtomicList	AtomicList-class
SimpleAtomicList-class	AtomicList-class
SimpleCharacterList	AtomicList-class
SimpleCharacterList-class	AtomicList-class
SimpleComplexList	AtomicList-class
SimpleComplexList-class	AtomicList-class
SimpleDataFrameList	DataFrameList-class
SimpleDataFrameList-class	DataFrameList-class
SimpleDFrameList	DataFrameList-class
SimpleDFrameList-class	DataFrameList-class
SimpleFactorList	AtomicList-class
SimpleFactorList-class	AtomicList-class
SimpleGrouping-class	Grouping-class
SimpleIntegerList	AtomicList-class
SimpleIntegerList-class	AtomicList-class
SimpleIntegerRangesList	IntegerRangesList-class
SimpleIntegerRangesList-class	IntegerRangesList-class
SimpleIRangesList	IRangesList-class
SimpleIRangesList-class	IRangesList-class
SimpleLogicalList	AtomicList-class
SimpleLogicalList-class	AtomicList-class
SimpleManyToManyGrouping-class	Grouping-class
SimpleManyToOneGrouping-class	Grouping-class
SimpleNormalIRangesList	IRangesList-class
SimpleNormalIRangesList-class	IRangesList-class
SimpleNumericList	AtomicList-class
SimpleNumericList-class	AtomicList-class
SimpleRawList	AtomicList-class
SimpleRawList-class	AtomicList-class
SimpleRleList	AtomicList-class
SimpleRleList-class	AtomicList-class
SimpleRleViewsList-class	RleViewsList-class
SimpleSplitDataFrameList	DataFrameList-class
SimpleSplitDataFrameList-class	DataFrameList-class
SimpleSplitDFrameList	DataFrameList-class
SimpleSplitDFrameList-class	DataFrameList-class
SimpleViewsList	ViewsList-class
SimpleViewsList-class	ViewsList-class
slice	slice-methods
slice,ANY-method	slice-methods
slice,Rle-method	slice-methods
slice,RleList-method	slice-methods
slice-methods	slice-methods
slidingWindows	IPosRanges-class
slidingWindows,IPosRanges-method	IPosRanges-class
smoothEnds,CompressedIntegerList-method	AtomicList-utils
smoothEnds,NumericList-method	AtomicList-utils
smoothEnds,RleList-method	AtomicList-utils
smoothEnds,SimpleIntegerList-method	AtomicList-utils
solveUserSEW	IRanges-constructor
sort,List-method	AtomicList-class
space	IntegerRangesList-class
space,CompressedHitsList-method	CompressedHitsList-class
space,IntegerRangesList-method	IntegerRangesList-class
split<-,Vector-method	seqapply
SplitDataFrameList	DataFrameList-class
SplitDataFrameList-class	DataFrameList-class
SplitDFrameList	DataFrameList-class
SplitDFrameList-class	DataFrameList-class
splitRanges	Rle-class-leftovers
splitRanges,Rle-method	Rle-class-leftovers
splitRanges,vector_OR_factor-method	Rle-class-leftovers
stack,DataFrameList-method	DataFrameList-class
start,CompressedRangesList-method	IRangesList-class
start,IRanges-method	IRanges-class
start,NCList-method	NCList-class
start,NCLists-method	NCList-class
start,PartitioningByEnd-method	Grouping-class
start,PartitioningByWidth-method	Grouping-class
start,Pos-method	IPosRanges-class
start,Ranges-method	IPosRanges-class
start,RangesList-method	IntegerRangesList-class
start,SimpleViewsList-method	ViewsList-class
start,Views-method	Views-class
start<-	IPosRanges-class
start<-,IntegerRangesList-method	IntegerRangesList-class
start<-,IRanges-method	IRanges-class
start<-,Views-method	Views-class
startsWith,CharacterList,ANY-method	AtomicList-utils
startsWith,RleList,ANY-method	AtomicList-utils
StitchedIPos	IPos-class
StitchedIPos-class	IPos-class
sub,ANY,ANY,CompressedCharacterList-method	AtomicList-utils
sub,ANY,ANY,CompressedRleList-method	AtomicList-utils
sub,ANY,ANY,SimpleCharacterList-method	AtomicList-utils
sub,ANY,ANY,SimpleRleList-method	AtomicList-utils
subject	Views-class
subject,SimpleRleViewsList-method	RleViewsList-class
subject,Views-method	Views-class
subsetByOverlaps	findOverlaps-methods
subsetByOverlaps,Vector,Vector-method	findOverlaps-methods
subviews	Views-class
subviews,Views-method	Views-class
successiveIRanges	IRanges-utils
successiveViews	Views-class
sum,CompressedIntegerList-method	AtomicList-summarization
sum,CompressedLogicalList-method	AtomicList-summarization
sum,CompressedNumericList-method	AtomicList-summarization
sum,Views-method	view-summarization-methods
Summary,AtomicList-method	AtomicList-summarization
summary,CompressedIRangesList-method	IRangesList-class
Summary,CompressedRleList-method	AtomicList-summarization
summary,IPos-method	IPos-class
summary,IPosRanges-method	IPosRanges-class
Summary,Views-method	view-summarization-methods
summary.IPos	IPos-class
summary.IPosRanges	IPosRanges-class
table,AtomicList-method	AtomicList-class
table,SimpleAtomicList-method	AtomicList-class
tapply,ANY,Vector-method	Vector-class-leftovers
tapply,Vector,ANY-method	Vector-class-leftovers
tapply,Vector,Vector-method	Vector-class-leftovers
terminators	intra-range-methods
terminators,IntegerRanges-method	intra-range-methods
terminators,RangesList-method	intra-range-methods
threebands	intra-range-methods
threebands,IRanges-method	intra-range-methods
tile	IPosRanges-class
tile,IPosRanges-method	IPosRanges-class
to,CompressedHitsList-method	CompressedHitsList-class
togroup	Grouping-class
togroup,ANY-method	Grouping-class
togroup,H2LGrouping-method	Grouping-class
togroup,ManyToOneGrouping-method	Grouping-class
togroup,Partitioning-method	Grouping-class
togrouplength	Grouping-class
togrouplength,ManyToOneGrouping-method	Grouping-class
togrouprank	Grouping-class
togrouprank,H2LGrouping-method	Grouping-class
tolower,CompressedCharacterList-method	AtomicList-utils
tolower,CompressedRleList-method	AtomicList-utils
tolower,SimpleCharacterList-method	AtomicList-utils
tolower,SimpleRleList-method	AtomicList-utils
toupper,CompressedCharacterList-method	AtomicList-utils
toupper,CompressedRleList-method	AtomicList-utils
toupper,SimpleCharacterList-method	AtomicList-utils
toupper,SimpleRleList-method	AtomicList-utils
transform,SplitDataFrameList-method	DataFrameList-class
trim	Views-class
trim,Views-method	Views-class
union	setops-methods
union,CompressedIRangesList,CompressedIRangesList-method	setops-methods
union,IntegerRanges,IntegerRanges-method	setops-methods
union,IntegerRangesList,IntegerRangesList-method	setops-methods
union,Pairs,missing-method	setops-methods
unique,CompressedList-method	AtomicList-class
unique,RleList-method	AtomicList-class
unlist,CompressedList-method	CompressedList-class
unlist,SimpleFactorList-method	AtomicList-class
unlist,SimpleNormalIRangesList-method	IRangesList-class
unlist,SimpleRleList-method	AtomicList-class
unlist,Views-method	Views-class
unsplit,List-method	seqapply
UnstitchedIPos	IPos-class
UnstitchedIPos-class	IPos-class
unstrsplit,CharacterList-method	AtomicList-utils
unstrsplit,RleList-method	AtomicList-utils
updateObject,IPos-method	IPos-class
update_ranges	intra-range-methods
update_ranges,IRanges-method	intra-range-methods
update_ranges,Views-method	intra-range-methods
var,AtomicList,AtomicList-method	AtomicList-summarization
var,AtomicList,missing-method	AtomicList-summarization
view-summarization-methods	view-summarization-methods
viewApply	view-summarization-methods
viewApply,RleViews-method	view-summarization-methods
viewApply,RleViewsList-method	view-summarization-methods
viewApply,Views-method	view-summarization-methods
viewMaxs	view-summarization-methods
viewMaxs,RleViews-method	view-summarization-methods
viewMaxs,RleViewsList-method	view-summarization-methods
viewMeans	view-summarization-methods
viewMeans,RleViews-method	view-summarization-methods
viewMeans,RleViewsList-method	view-summarization-methods
viewMins	view-summarization-methods
viewMins,RleViews-method	view-summarization-methods
viewMins,RleViewsList-method	view-summarization-methods
viewRangeMaxs	view-summarization-methods
viewRangeMaxs,RleViews-method	view-summarization-methods
viewRangeMaxs,RleViewsList-method	view-summarization-methods
viewRangeMins	view-summarization-methods
viewRangeMins,RleViews-method	view-summarization-methods
viewRangeMins,RleViewsList-method	view-summarization-methods
Views	Views-class
Views,integer-method	Views-class
Views,numeric-method	Views-class
Views,Rle-method	RleViews-class
Views,RleList-method	RleViewsList-class
Views-class	Views-class
ViewsList	ViewsList-class
ViewsList-class	ViewsList-class
viewSums	view-summarization-methods
viewSums,RleViews-method	view-summarization-methods
viewSums,RleViewsList-method	view-summarization-methods
viewWhichMaxs	view-summarization-methods
viewWhichMaxs,RleViews-method	view-summarization-methods
viewWhichMaxs,RleViewsList-method	view-summarization-methods
viewWhichMins	view-summarization-methods
viewWhichMins,RleViews-method	view-summarization-methods
viewWhichMins,RleViewsList-method	view-summarization-methods
vmembers	Grouping-class
vmembers,H2LGrouping-method	Grouping-class
vmembers,ManyToOneGrouping-method	Grouping-class
which,CompressedLogicalList-method	AtomicList-utils
which,CompressedRleList-method	AtomicList-utils
which,SimpleLogicalList-method	AtomicList-utils
which,SimpleRleList-method	AtomicList-utils
which.max,CompressedRleList-method	AtomicList-utils
which.max,IntegerList-method	AtomicList-utils
which.max,NumericList-method	AtomicList-utils
which.max,RleList-method	AtomicList-utils
which.max,Views-method	view-summarization-methods
which.min,CompressedRleList-method	AtomicList-utils
which.min,IntegerList-method	AtomicList-utils
which.min,NumericList-method	AtomicList-utils
which.min,RleList-method	AtomicList-utils
which.min,Views-method	view-summarization-methods
whichAsIRanges	IRanges-utils
whichFirstNotNormal	IPosRanges-class
whichFirstNotNormal,IntegerRangesList-method	IntegerRangesList-class
whichFirstNotNormal,Ranges-method	IPosRanges-class
width	IPosRanges-class
width,CompressedRangesList-method	IRangesList-class
width,IRanges-method	IRanges-class
width,MaskCollection-method	MaskCollection-class
width,NCList-method	NCList-class
width,NCLists-method	NCList-class
width,PartitioningByEnd-method	Grouping-class
width,PartitioningByWidth-method	Grouping-class
width,Pos-method	IPosRanges-class
width,Ranges-method	IPosRanges-class
width,RangesList-method	IntegerRangesList-class
width,SimpleViewsList-method	ViewsList-class
width,Views-method	Views-class
width<-	IPosRanges-class
width<-,IntegerRangesList-method	IntegerRangesList-class
width<-,IRanges-method	IRanges-class
width<-,Views-method	Views-class
window<-,factor-method	Vector-class-leftovers
window<-,Vector-method	Vector-class-leftovers
window<-,vector-method	Vector-class-leftovers
window<-.factor	Vector-class-leftovers
window<-.Vector	Vector-class-leftovers
window<-.vector	Vector-class-leftovers
windows,Ranges-method	intra-range-methods
with,Vector-method	Vector-class-leftovers
[,CompressedSplitDataFrameList-method	DataFrameList-class
[,SimpleSplitDataFrameList-method	DataFrameList-class
[<-,SplitDataFrameList-method	DataFrameList-class
[[,SDFLWrapperForTransform-method	DataFrameList-class
[[<-,SDFLWrapperForTransform-method	DataFrameList-class
