Package: GenomAutomorphism
Title: Compute the automorphisms between DNA's Abelian group
        representations
Version: 1.12.0
Authors@R: 
    person( given = "Robersy",
            family = "Sanchez",
            role = c("aut", "cre"),
            email = "genomicmath@gmail.com",
            comment = c(ORCID = "0000-0002-5246-1453"))
URL: https://github.com/genomaths/GenomAutomorphism
BugReports: https://github.com/genomaths/GenomAutomorphism/issues
Description: This is a R package to compute the automorphisms between
        pairwise aligned DNA sequences represented as elements from a
        Genomic Abelian group. In a general scenario, from genomic
        regions till the whole genomes from a given population (from
        any species or close related species) can be algebraically
        represented as a direct sum of cyclic groups or more
        specifically Abelian p-groups. Basically, we propose the
        representation of multiple sequence alignments of length N bp
        as element of a finite Abelian group created by the direct sum
        of homocyclic Abelian group of prime-power order.
Depends: R (>= 4.4.0),
License: Artistic-2.0
Encoding: UTF-8
biocViews: MathematicalBiology, ComparativeGenomics,
        FunctionalGenomics, MultipleSequenceAlignment, WholeGenome
Imports: Biostrings, BiocGenerics, BiocParallel, Seqinfo,
        GenomicRanges, IRanges, matrixStats, XVector, dplyr,
        data.table, parallel, doParallel, foreach, methods, S4Vectors,
        stats, numbers, utils
RoxygenNote: 7.3.2
Suggests: spelling, rmarkdown, BiocStyle, testthat (>= 3.0.0), knitr
Roxygen: list(markdown = TRUE)
Language: en-US
LazyData: false
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:17:59 UTC
RemoteUrl: https://github.com/bioc/GenomAutomorphism
RemoteRef: RELEASE_3_22
RemoteSha: bb13ab80f5c0a0c4f7b25a74fd77b1efdd579c53
NeedsCompilation: no
Packaged: 2026-01-24 20:01:38 UTC; root
Author: Robersy Sanchez [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-5246-1453>)
Maintainer: Robersy Sanchez <genomicmath@gmail.com>
Built: R 4.5.2; ; 2026-01-24 20:03:29 UTC; windows
