Package: DNAcycP2
Title: DNA Cyclizability Prediction
Version: 1.2.0
Authors@R: 
    person("Brody", "Kendall", 
        email = "curtiskendall2025@u.northwestern.edu", 
        role = c("aut"))
    person("Keren", "Li",
        email = "kli@uab.edu",
        role = c("aut"))
    person("Ji-Ping", "Wang", 
        email = "jzwang@northwestern.edu", 
        role = c("aut", "cre"),
        comment = c(ORCID="0000-0002-8398-939X"))
Description: This package performs prediction of intrinsic
        cyclizability of of every 50-bp subsequence in a DNA sequence.
        The input could be a file either in FASTA or text format. The
        output will be the C-score, the estimated intrinsic
        cyclizability score for each 50 bp sequences in each entry of
        the sequence set.
Depends: R (>= 4.4.0)
Imports: basilisk, reticulate
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
StagedInstall: yes
BinaryFiles: inst/extdata/irlstm/saved_model.pb,
        inst/extdata/irlstm_smooth/saved_model.pb
biocViews: NeuralNetwork, StructuralPrediction
VignetteBuilder: knitr
Suggests: knitr, rmarkdown, BiocGenerics, RUnit, tinytest, BiocStyle,
        Biostrings
URL: https://github.com/jipingw/DNAcycP2
BugReports: https://github.com/jipingw/DNAcycP2
Config/pak/sysreqs: libpng-dev python3
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:35:02 UTC
RemoteUrl: https://github.com/bioc/DNAcycP2
RemoteRef: RELEASE_3_22
RemoteSha: 05e80ac1796597e276585f8fa19183646daa8e03
NeedsCompilation: no
Packaged: 2026-01-24 20:29:06 UTC; root
Author: Ji-Ping Wang [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8398-939X>)
Maintainer: Ji-Ping Wang <jzwang@northwestern.edu>
Built: R 4.5.2; ; 2026-01-24 20:30:22 UTC; windows
