Package: CRImage
Type: Package
Title: CRImage a package to classify cells and calculate tumour
        cellularity
Version: 1.58.0
Date: 2012-10-01
Author: Henrik Failmezger <failmezger@mpipz.mpg.de>, Yinyin Yuan
        <Yinyin.Yuan@cancer.org.uk>, Oscar Rueda
        <oscar.rueda@cancer.org.uk>, Florian Markowetz
        <Florian.Markowetz@cancer.org.uk>
Maintainer: Henrik Failmezger <failmezger@mpipz.mpg.de>, Yinyin Yuan
 <Yinyin.Yuan@cancer.org.uk>
Description: CRImage provides functionality to process and analyze
        images, in particular to classify cells in biological images.
        Furthermore, in the context of tumor images, it provides
        functionality to calculate tumour cellularity.
License: Artistic-2.0
LazyLoad: yes
Imports: MASS, e1071, foreach, sgeostat
Depends: EBImage, DNAcopy, aCGH
Collate: plotCorrectedCN.R correctCopyNumber.R writeDensityImage.R
        convertRGBToHSV.R convertHSVToRGB.R imageCompression.R
        createBinaryImage.R colorCorrection.R searchStructures.R
        segmentStructures.R classifyStructures.R numberOfNeighbors.R
        segmentCytoplasma.R segmentImage.R createClassifier.R
        kernelSmoother.R paintCells.R classifyCells.R
        determineCellularity.R calculateCellularity.R findSlices.R
        parseFinalScan.R classificationAperio.R processAperio.R
        Phansalkar_threshold.R SauvolaThreshold.R
        calculateMeanStdTarget.R convertLABToRGB.R convertRGBToLAB.R
        localORThreshold.R oregonThreshold.R localThreshold.R
        calculateOtsu.R classifyPen.R getImageDistance.R hist3d.R
        labelCells.R plotImage.R
biocViews: CellBiology, Classification
Packaged: 2026-02-15 08:08:07 UTC; root
Config/pak/sysreqs: libfftw3-dev make libjpeg-dev libpng-dev
        libtiff-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:05:56 UTC
RemoteUrl: https://github.com/bioc/CRImage
RemoteRef: RELEASE_3_22
RemoteSha: 74fd591af96f3095cfa95804588aa3e250511f23
NeedsCompilation: no
Built: R 4.5.2; ; 2026-02-15 08:09:27 UTC; windows
