Package: BOBaFIT
Type: Package
Title: Refitting diploid region profiles using a clustering procedure
Version: 1.14.0
Authors@R: c(person("Andrea", "Poletti", email="andrea.poletti5@gmail.com", 
      role=c("aut")),
      person("Gaia", "Mazzocchetti", email="bioinformatic.seragnoli@gmail.com", 
      role=c("aut", "cre")),
      person("Vincenza", "Solli", email="vincenza.solli2@unibo.it", 
      role=c("aut")))
Description: This package provides a method to refit and correct the
        diploid region in copy number profiles. It uses a clustering
        algorithm to identify pathology-specific normal (diploid)
        chromosomes and then use their copy number signal to refit the
        whole profile.  The package is composed by three functions:
        DRrefit (the main function), ComputeNormalChromosome and
        PlotCluster.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.2
URL: https://github.com/andrea-poletti-unibo/BOBaFIT
BugReports: https://github.com/andrea-poletti-unibo/BOBaFIT/issues
Imports: dplyr, NbClust, ggplot2, ggbio, grDevices, stats, tidyr,
        GenomicRanges, ggforce, stringr, plyranges, methods, utils,
        magrittr
Suggests: rmarkdown, markdown, BiocStyle, knitr, testthat (>= 3.0.0),
        utils, testthat
Config/testthat/edition: 3
biocViews: CopyNumberVariation, Clustering, Visualization,
        Normalization, Software
Depends: R (>= 2.10)
VignetteBuilder: knitr
Config/pak/sysreqs: libfontconfig1-dev libfreetype6-dev make libbz2-dev
        libicu-dev liblzma-dev libpng-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:14:21 UTC
RemoteUrl: https://github.com/bioc/BOBaFIT
RemoteRef: RELEASE_3_22
RemoteSha: b49854696b9154cdee7638a0e5f02174ac367c68
NeedsCompilation: no
Packaged: 2026-01-24 20:35:45 UTC; root
Author: Andrea Poletti [aut],
  Gaia Mazzocchetti [aut, cre],
  Vincenza Solli [aut]
Maintainer: Gaia Mazzocchetti <bioinformatic.seragnoli@gmail.com>
Built: R 4.5.2; ; 2026-01-24 20:38:00 UTC; windows
