Package: AssessORF
Type: Package
Title: Assess Gene Predictions Using Proteomics and Evolutionary
        Conservation
Version: 1.28.0
Date: 2024-04-09
Authors@R: c(
    person("Deepank", "Korandla", email = "dkorandl@alumni.cmu.edu", role = c("aut", "cre")),
    person("Erik", "Wright", email = "eswright@pitt.edu", role = "aut"))
Description: In order to assess the quality of a set of predicted genes
        for a genome, evidence must first be mapped to that genome.
        Next, each gene must be categorized based on how strong the
        evidence is for or against that gene. The AssessORF package
        provides the functions and class structures necessary for
        accomplishing those tasks, using proteomic hits and
        evolutionarily conserved start codons as the forms of evidence.
Depends: R (>= 3.5.0), DECIPHER (>= 2.10.0)
Imports: Biostrings, GenomicRanges, IRanges, graphics, grDevices,
        methods, stats, utils
Suggests: AssessORFData, BiocStyle, knitr, rmarkdown, RSQLite (>= 1.1)
biocViews: ComparativeGenomics, GenePrediction, GenomeAnnotation,
        Genetics, Proteomics, QualityControl, Visualization
License: GPL-3
Encoding: UTF-8
NeedsCompilation: no
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:48:40 UTC
RemoteUrl: https://github.com/bioc/AssessORF
RemoteRef: RELEASE_3_22
RemoteSha: 06260fd53367c1d0db2e79c613be5c3958bcafe8
Packaged: 2026-02-05 08:51:33 UTC; root
Author: Deepank Korandla [aut, cre],
  Erik Wright [aut]
Maintainer: Deepank Korandla <dkorandl@alumni.cmu.edu>
Built: R 4.5.2; ; 2026-02-05 08:53:16 UTC; windows
