Package: ACE
Title: Absolute Copy Number Estimation from Low-coverage Whole Genome
        Sequencing
Description: Uses segmented copy number data to estimate tumor cell
        percentage and produce copy number plots displaying absolute
        copy numbers.
Version: 1.28.0
Author: Jos B Poell
Maintainer: Jos B Poell <j.poell@amsterdamumc.nl>
Depends: R (>= 3.4)
Imports: Biobase, QDNAseq, ggplot2, grid, stats, utils, methods,
        grDevices, GenomicRanges
biocViews: CopyNumberVariation, DNASeq, Coverage, WholeGenome,
        Visualization, Sequencing
License: GPL-2
Encoding: UTF-8
LazyData: true
URL: https://github.com/tgac-vumc/ACE
RoxygenNote: 6.1.1
Suggests: knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2026-01-24 22:32:22 UTC; root
Config/pak/sysreqs: libbz2-dev liblzma-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:46:24 UTC
RemoteUrl: https://github.com/bioc/ACE
RemoteRef: RELEASE_3_22
RemoteSha: 1cb1960970cd184112b4dc27fa3a4da6e4cd1dc7
Built: R 4.5.2; ; 2026-01-24 22:34:04 UTC; windows
