Changes in version 0.99.12                       

  - add more runnable examples and increase the coverage of tests
    (44.18%) (2025-11-30, Sun)
  - use new demo data for base modification (demo_bmdata) and move some
    dependency packages from 'Imports' to 'Suggests' (2025-11-10, Mon)
  - consistently use 'hg38' for demo with new demo file, a small subset
    derived from GSM6418464 (2025-11-07, Fri)
  - fixed Notes reported by BiocCheck and add 'GeneRegulation' to
    'biocViews' (2025-11-07, Fri)
  - update test for the changes of TxDb.Hsapiens.UCSC.hg19.knownGene
    (2025-11-06, Thu)
  - new cache mechanism from 'yulab.utils' (2025-10-15, Wed)
  - fixed R check (2025-10-05, Sun)
  - remove dependent of Vennerable package (2025-09-27, Sat)
  - epiSeeker inherits from ChIPseeker to support analysis of
    multi-omics epigenomic data (2025-09-19, Fri)
      - epiSeeker inherits functions from ChIPseeker to plot peak
        profile, plot coverage, peak annotaions, visualization of
        annotation, data mining and statistic for peak overla
      - epiSeeker merges multiple functions to plot profile
        (getTagMatrix + plotPeakProf/plotPeakHeatmap), and add featrues
        of dealing missing data and different statistic methods to
        combind data
      - epiSeeker provides new features for plotCov to plot cluster tree
        and peak co-accessibility
      - epiSeeekr provides interactive function for user to explore data
      - epiSeeker provides functions to plot gene structure, base
        modification and motif
      - see more on
        https://github.com/YuLab-SMU/ChIPseeker/blob/devel/NEWS.md