| alphabet | An S4 class to represent a PWM matrix. |
| consensus | An S4 class to represent a PWM matrix. |
| consensus-method | An S4 class to represent a PWM matrix. |
| ic | An S4 class to represent a PWM matrix. |
| ic-method | An S4 class to represent a PWM matrix. |
| makePWM | Constructing a pwm object |
| plot-method | An S4 class to represent a PWM matrix. |
| pwm | An S4 class to represent a PWM matrix. |
| pwm-class | An S4 class to represent a PWM matrix. |
| pwm-method | An S4 class to represent a PWM matrix. |
| seqLogo | Plot a sequence logo for a given position weight matrix |
| show-method | An S4 class to represent a PWM matrix. |
| summary-method | An S4 class to represent a PWM matrix. |