| annotate_pfam | Annotate proteins sequences with PFAM domains |
| classification_scheme | Data frame of TF family classification scheme |
| classify_tfs | Identify TFs and classify them in families |
| get_tf_counts | Get TF frequencies for each species as a SummarizedExperiment object |
| gsu | Protein sequences of the algae species Galdieria sulphuraria |
| gsu_annotation | Domain annotation for the algae species Galdieria sulphuraria The data set was created using the funcion 'annotate_pfam()' in local mode. |
| gsu_families | TFs families of the algae species Galdieria sulphuraria The data set was created using the funcion 'classify_tfs()'. |
| hmmer_is_installed | Check if HMMER is installed |
| tf_counts | TF counts per family in 4 simulated species |