| all.datasets | data objects for rat liver_brain samples |
| array.proportions | proportions for rat liver and brain mixing samples |
| array.signatures | data objects for rat liver and brain pure samples |
| condplot | Draw the plot of the condition numbers vs. the number of genes in the signature matrix |
| datasets | data objects for liver and kidney mixing samples |
| decon.bootstrap | Estimate the confidence interval for the proportions predicted by deconvolution |
| DeconRNASeq | Function for Deconvolution of Complex Samples from RNA-Seq. |
| DeconRNASeq.package | package DeconRNASeq contains function "DeconRNASeq", implementing the decomposition of RNA-Seq expression profilings of heterogeneous tissues into cell/tissue type specific expression and cell type concentration based on cell-type-specific reference measurements. |
| DeconRNASeq_package | package DeconRNASeq contains function "DeconRNASeq", implementing the decomposition of RNA-Seq expression profilings of heterogeneous tissues into cell/tissue type specific expression and cell type concentration based on cell-type-specific reference measurements. |
| fraction | mixing fractions for multi-tissues mixing samples |
| liver_kidney | data objects for liver and kidney mixing samples |
| multiplot | Draw the plots of proportions of cells determined from deconvolution vs. proportions of the cells actually mixed (when available) with RMSE. |
| multi_tissue | data objects for multi-tissues mixing samples |
| proportions | proportions for liver and kidney mixing samples |
| rmse | Calculate the differences between proportions predicted by deconvolution and the values actually measured |
| signatures | data objects for liver and kidney pure samples |
| x.data | data objects for multi-tissues mixing samples |
| x.signature | data objects for multi-tissues pure samples |
| x.signature.filtered | filtered signatures for multi-tissues pure samples |
| x.signature.filtered.optimal | selected signatures from multi-tissues pure samples |