| maDefaultPar {marray} | R Documentation |
This function returns default graphical parameters for microarray objects. The parameters may be passed as arguments to the functions maBoxplot and maPlot.
maDefaultPar(m, x, y, z)
m |
Microarray object of class "marrayRaw" and "marrayNorm". |
x |
Name of accessor method for the abscissa spot statistic,
typically a slot name for the microarray object m, such as
maA. |
y |
Name of accessor method for the ordinate spot statistic,
typically a slot name for the microarray object m, such as
maM. |
z |
Name of accessor method for the spot statistic used to
stratify the data, typically a slot name for the microarray layout
object (see "marrayLayout") such as maPlate or
a method such as maPrintTip. |
A list with elements
def.box |
default graphical parameters for maBoxplot. |
def.plot |
default graphical parameters for maPlot. |
def.lines |
default graphical parameters for functions such as maLoessLines used in maPlot. |
def.legend |
default graphical parameters for functions such as maLegendLines used in maPlot. |
def.text |
default graphical parameters for functions such as maText used in maPlot. |
Sandrine Dudoit, http://www.stat.berkeley.edu/~sandrine.
S. Dudoit and Y. H. Yang. (2002). Bioconductor R packages for exploratory analysis and normalization of cDNA microarray data. In G. Parmigiani, E. S. Garrett, R. A. Irizarry and S. L. Zeger, editors, The Analysis of Gene Expression Data: Methods and Software, Springer, New York.
maBoxplot, maPlot,
maLegendLines, maLoessLines,
maText, maDotsDefaults.
# See examples for maPlot.