| plotMA3by2 {limma} | R Documentation |
Write MA-plots to files in PNG format, six plots to a file in a 3 by 2 grid arrangement.
plotMA3by2(MA, prefix="MA", main=colnames(MA), zero.weights=FALSE, common.lim=TRUE, ...)
MA |
an MAList or RGList object, or any list with components M containing log-ratios and A containing average intensities |
prefix |
character string giving prefix to attach to file names |
main |
character vector giving titles for plots |
zero.weights |
logical, should points with non-positive weights be plotted |
common.lim |
logical, should all plots on a page use the same axis limits |
... |
any other arguments are passed to plotMA |
This function writes plots in PNG format in an arrangement optimized for A4-sized paper.
No value is returned, but one or more files are written to the working directory.
The number of files is determined by the number of columns of MA.
Gordon Smyth
An overview of diagnostic functions available in LIMMA is given in 7.Diagnostics.