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| alongChrom | A function for plotting expression data from an exprset for a given chromosome. |
| amplicon.plot | Create an amplicon plot |
| buildACMainLabel | A function for plotting expression data from an exprset for a given chromosome. |
| cColor | A function for marking specific probes on a cPlot. |
| closeHtmlPage | Open and close an HTML file for writing. |
| cPlot | A plotting function for chromosomes. |
| cScale | A function for mapping chromosome length to a number of points. |
| cullACXPoints | A function for plotting expression data from an exprset for a given chromosome. |
| dChip.colors | A function to get the Red-Blue color scheme used by dChip |
| defMapFun | A function to plot a graph colored by expression data |
| densCols | Scatterplots with smoothed densities color representation |
| dispACXaxis | A function for plotting expression data from an exprset for a given chromosome. |
| doACCumPlot | A function for plotting expression data from an exprset for a given chromosome. |
| doACImagePlot | A function for plotting expression data from an exprset for a given chromosome. |
| doACLocalPlot | A function for plotting expression data from an exprset for a given chromosome. |
| doACMatPlot | A function for plotting expression data from an exprset for a given chromosome. |
| emptyACPlot | A function for plotting expression data from an exprset for a given chromosome. |
| eset133a | A dataset of class exprSet |
| fixACPhysPoints | A function for plotting expression data from an exprset for a given chromosome. |
| getACClosestPos | A function for plotting expression data from an exprset for a given chromosome. |
| getACDataEnv | A function for plotting expression data from an exprset for a given chromosome. |
| getACExprs | A function for plotting expression data from an exprset for a given chromosome. |
| getACGeneSyms | A function for plotting expression data from an exprset for a given chromosome. |
| getACPlotLabs | A function for plotting expression data from an exprset for a given chromosome. |
| getACStrandVals | A function for plotting expression data from an exprset for a given chromosome. |
| GetColor | A function to get the Red-Blue color scheme used by dChip |
| getPlotExpressionColors | A function to plot a graph colored by expression data |
| greenred.colors | A function to get the Red-Blue color scheme used by dChip |
| highlightACDups | A function for plotting expression data from an exprset for a given chromosome. |
| identifyLines | A function for identifying sample lines on an alongChrom() plot. |
| imageMap | Write an HTML IMG tag together with a MAP image map. |
| imageMap,matrix,connection,list,character-method | Write an HTML IMG tag together with a MAP image map. |
| imageMap,matrix-method | Write an HTML IMG tag together with a MAP image map. |
| imageMap-methods | Write an HTML IMG tag together with a MAP image map. |
| limitACXRange | A function for plotting expression data from an exprset for a given chromosome. |
| make.chromOrd | Make a chromOrd object |
| Makesense | Produce Smoothed Sense/Anti-sense For All Chromosomes |
| Makesense,exprSet-method | Produce Smoothed Sense/Anti-sense For All Chromosomes |
| Makesense,matrix-method | Produce Smoothed Sense/Anti-sense For All Chromosomes |
| openHtmlPage | Open and close an HTML file for writing. |
| plotChr | Plot Smoothed Sense/Anti-sense of Specified Chromosomes |
| plotExpressionGraph | A function to plot a graph colored by expression data |
| saveeps | Save the contents of the current graphics device to a file |
| savepdf | Save the contents of the current graphics device to a file |
| savepng | Save the contents of the current graphics device to a file |
| savetiff | Save the contents of the current graphics device to a file |
| scaleACData | A function for plotting expression data from an exprset for a given chromosome. |
| smoothScatter | Scatterplots with smoothed densities color representation |