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| ALL | Acute Lymphoblastic Leukemia Data from the Ritz Laboratory |
| Bdists | Distance matrices for the BCR/ABL and NEG subgroups. |
| combGOGraph | Defunct Functions in GOstats Package |
| compCorrGraph | A function to compute a correlation based graph from Gene Expression Data |
| compGdist | A function to compute the distance between pairs of nodes in a graph. |
| dropECode | Drop GO labels for specified Evidence Codes |
| enumPairs | Triad Functions |
| getEvidence | Get the Evidence codes for a set of GO terms. |
| getGOChildren | Functions to Access GO data. |
| getGOOntology | Functions to Access GO data. |
| getGOParents | Functions to Access GO data. |
| getGOTerm | Functions to Access GO data. |
| getOntology | Get GO terms for a specified ontology |
| GOGraph | Construct the GO graph given a set of leaves. |
| GOHyperG | Hypergeometric Tests for GO |
| GOLeaves | Identify the leaves in a GO Graph |
| GOstats-defunct | Defunct Functions in GOstats Package |
| hasGOannote | Check for GO annotation |
| idx2dimnames | Index to Dimnames |
| isTriad | Triad Functions |
| makeGOGraph | Construct a GO Graph |
| Ndists | Distance matrices for the BCR/ABL and NEG subgroups. |
| notConn | Find genes that are not connected to the others. |
| oneGOGraph | Construct the GO graph given a set of leaves. |
| reduce2Degreek | Triad Functions |
| shortestPath | Shortest Path Analysis |
| simLL | Functions to compute similarities between GO graphs and also between LocusLink IDs based on their induced GO graphs. |
| simLP | Functions to compute similarities between GO graphs and also between LocusLink IDs based on their induced GO graphs. |
| simUI | Functions to compute similarities between GO graphs and also between LocusLink IDs based on their induced GO graphs. |
| triad | Triad Functions |
| triadCensus | Triad Functions |