R (>= 3.6.0), BiocStyle, knitr, readxl, CATALYST, diffcyt,
HDCytoData, uwot, cowplot
R (>= 4.0), NanoStringNCTools, GeomxTools
R (>= 3.3.0), flowCore, flowStats, flowWorkspace
R (>= 3.3.0), Glimma (>= 1.1.9), limma, edgeR, gplots,
RColorBrewer, Mus.musculus, R.utils, TeachingDemos, statmod,
BiocWorkflowTools
R (>= 3.5.0), DRIMSeq, DEXSeq, stageR, DESeq2, edgeR, rafalib,
devtools
R (>= 3.3.0), edgeR (>= 4.3.6), gplots, org.Mm.eg.db, GO.db,
BiocStyle
dplyr, fastqcr, stringr, tidyr, stats, utils, magrittr,
reticulate
Biobase, S4Vectors, rjson, readxl, EnvStats, dplyr, reshape2,
methods, utils, stats, data.table, outliers, BiocGenerics,
ggplot2, ggrepel, ggforce, cowplot, scales, umap, Rtsne,
pheatmap, BiocStyle, networkD3
utils, methods, knitr, callr, rmarkdown, CodeDepends,
BiocStyle
affy, limma, hgfocuscdf, knitr, rmarkdown, BiocStyle
chipseqDBData, BiocStyle, BiocFileCache, ChIPpeakAnno, Gviz,
Rsamtools, TxDb.Mmusculus.UCSC.mm10.knownGene, csaw, edgeR,
knitr, org.Mm.eg.db, rtracklayer, rmarkdown
readxl, R.utils, SingleCellExperiment, scater, scran, limma,
BiocFileCache, org.Mm.eg.db