| Imports Me |
a4Preproc, affycoretools, affylmGUI, alabaster.bumpy, alabaster.files, alabaster.matrix, alabaster.ranges, alabaster.se, AllelicImbalance, annmap, annotate, ASpli, atena, AUCell, autonomics, bambu, bamsignals, BASiCS, batchelor, beachmat, bigmelon, Bioc.gff, BiocBook, biocGraph, BiocHail, BiocIO, BiocSingular, biotmle, biovizBase, BiSeq, breakpointR, BrowserViz, bumphunter, BUSpaRse, CAGEfightR, CAGEr, celaref, CellBench, CellMixS, CellTrails, cfDNAPro, cghMCR, ChemmineOB, ChemmineR, ChIPseeker, chipseq, cicero, CircSeqAlignTk, CleanUpRNAseq, clusterSeq, cn.mops, CNEr, CNVPanelizer, COCOA, cola, compEpiTools, CompoundDb, concordexR, crisprBase, crisprBowtie, crisprBwa, crisprDesign, crisprScore, crisprViz, crlmm, csaw, CTexploreR, CuratedAtlasQueryR, cydar, dada2, dagLogo, DAMEfinder, ddCt, decompTumor2Sig, deconvR, DegCre, DEGreport, DelayedDataFrame, demuxSNP, derfinder, DESeq2, DESpace, DEWSeq, DEXSeq, DFplyr, diffcoexp, diffHic, dinoR, DirichletMultinomial, DiscoRhythm, DNAfusion, DRIMSeq, DropletUtils, DrugVsDisease, easyRNASeq, EBImage, EDASeq, eiR, eisaR, ELViS, enhancerHomologSearch, EnrichDO, epialleleR, EpiCompare, epimutacions, epistack, EpiTxDb, epivizrChart, epivizrStandalone, FamAgg, fastseg, ffpe, FindIT2, FLAMES, flowBin, flowClust, flowCore, flowFP, FlowSOM, flowSpecs, flowStats, flowWorkspace, fmcsR, frma, GA4GHclient, GA4GHshiny, gcapc, gDNAx, geneAttribution, geneClassifiers, GenomAutomorphism, GenomicAlignments, GenomicInteractions, GenomicPlot, GenomicTuples, geomeTriD, GeomxTools, glmGamPoi, gmoviz, goseq, GOTHiC, GSVA, Gviz, HDF5Array, heatmaps, hermes, HicAggR, HiCDOC, HiCExperiment, HiContacts, HiCParser, HiLDA, hopach, icetea, igvR, igvShiny, IHW, infercnv, INSPEcT, intansv, InteractionSet, IONiseR, iSEE, IsoformSwitchAnalyzeR, IVAS, KCsmart, ldblock, lefser, lemur, lisaClust, maaslin3, mariner, maser, MAST, matter, MEAL, meshr, MetaboAnnotation, metaMS, metaseqR2, methInheritSim, MethylAid, methylPipe, methylumi, mia, miaViz, miloR, mimager, MinimumDistance, MIRA, MiRaGE, missMethyl, mist, mobileRNA, Modstrings, mogsa, monaLisa, monocle, Moonlight2R, Motif2Site, msa, MsBackendSql, MsExperiment, MSnID, MultiAssayExperiment, multicrispr, MultiDataSet, multiMiR, MultimodalExperiment, mumosa, mutscan, mzR, NanoStringNCTools, nearBynding, notame, notameViz, npGSEA, nucleR, oligoClasses, openCyto, openPrimeR, ORFik, OUTRIDER, parglms, pcaMethods, PDATK, pdInfoBuilder, PharmacoGx, PhIPData, PhosR, phyloseq, piano, PIPETS, plyinteractions, podkat, pram, primirTSS, profileScoreDist, pRoloc, pRolocGUI, ProteoDisco, PSMatch, PureCN, QDNAseq, QFeatures, qsea, QTLExperiment, QuasR, R3CPET, RadioGx, raer, RaggedExperiment, ramr, ramwas, RCAS, RCy3, RCyjs, recoup, ReducedExperiment, REMP, ReportingTools, RGSEA, RiboCrypt, RiboDiPA, ribosomeProfilingQC, RJMCMCNucleosomes, rnaEditr, RNAmodR, RNAmodR.AlkAnilineSeq, RNAmodR.ML, RNAmodR.RiboMethSeq, RNAseqCovarImpute, roar, Rqc, rqubic, Rsamtools, rsbml, rScudo, rtracklayer, SanityR, saseR, SC3, scater, scDblFinder, scDotPlot, scmap, SCnorm, SCOPE, scPipe, scran, scruff, scuttle, sevenC, SGSeq, SharedObject, shinyDSP, shinyMethyl, signatureSearch, signeR, signifinder, simPIC, SingleCellExperiment, SingleMoleculeFootprinting, sitadela, Site2Target, SNPhood, snpStats, sparrow, SpatialExperiment, Spectra, splatter, SpliceWiz, SplicingGraphs, SplineDV, sRACIPE, sscu, StabMap, standR, strandCheckR, Structstrings, SummarizedExperiment, SVP, SynMut, systemPipeR, tadar, TAPseq, target, TCseq, TENxIO, TFBSTools, tidySpatialExperiment, ToxicoGx, trackViewer, transite, TreeSummarizedExperiment, tRNA, tRNAscanImport, TVTB, txcutr, UMI4Cats, unifiedWMWqPCR, UniProt.ws, universalmotif, uSORT, velociraptor, VisiumIO, visiumStitched, weitrix, xcms, XDE, XeniumIO, XVector, zitools, CENTREannotation, SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh38, SNPlocs.Hsapiens.dbSNP149.GRCh38, SNPlocs.Hsapiens.dbSNP150.GRCh38, SNPlocs.Hsapiens.dbSNP155.GRCh37, SNPlocs.Hsapiens.dbSNP155.GRCh38, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, CENTREprecomputed, curatedOvarianData, gDNAinRNAseqData, IHWpaper, KEGGandMetacoreDzPathwaysGEO, KEGGdzPathwaysGEO, microbiomeDataSets, MouseGastrulationData, MouseThymusAgeing, raerdata, scRNAseq, spatialLIBD, systemPipeRdata, TENxBUSData, VariantToolsData, GeoMxWorkflows, crispRdesignR, DCLEAR, decompDL, EEMDlstm, geno2proteo, HiCociety, hicream, locuszoomr, RNAseqQC, scPOEM, Signac, TaxaNorm, toxpiR, treediff, TSdeeplearning |
| Suggests Me |
acde, adverSCarial, aggregateBioVar, AIMS, AlphaMissenseR, ASSET, ASURAT, BaalChIP, baySeq, bigmelon, BiocParallel, BiocStyle, biocViews, biosigner, BLMA, BloodGen3Module, bnem, borealis, BUScorrect, BUSseq, CAFE, CAMERA, CausalR, ccrepe, CDI, cellmigRation, CexoR, chihaya, ChIPanalyser, ChIPXpress, CHRONOS, cleanUpdTSeq, clipper, ClustAll, clustComp, CNORfeeder, CNORfuzzy, consensus, cosmiq, COSNet, cpvSNP, crumblr, cypress, DEsubs, DExMA, DMRcaller, DMRcate, DNAcycP2, DspikeIn, ENmix, EpiMix, epiNEM, fCCAC, fcScan, fgga, FGNet, flowCut, flowTime, fmrs, GateFinder, gCrisprTools, gdsfmt, GEM, GeneNetworkBuilder, GeneOverlap, geneplast, geneRxCluster, geNetClassifier, genomation, GEOquery, GeoTcgaData, ginmappeR, GMRP, GOstats, GrafGen, GreyListChIP, GWASTools, h5vc, Harman, HiCDCPlus, hierGWAS, HIREewas, hypergraph, iCARE, iClusterPlus, IFAA, illuminaio, immunotation, INPower, IPO, kebabs, KEGGREST, LACE, MAGAR, magpie, massiR, MatrixRider, MBttest, Mergeomics, MetaboSignal, metagene2, MetCirc, methylCC, methylInheritance, MetNet, microbiome, miRBaseConverter, miRcomp, mirIntegrator, mnem, mosbi, MOSClip, motifStack, MsQuality, multiClust, MultiMed, MultiRNAflow, MungeSumstats, MWASTools, ncRNAtools, nempi, NetSAM, nondetects, nucleoSim, omicsGMF, OMICsPCA, OncoScore, PAA, panelcn.mops, Path2PPI, pathMED, PathNet, pathview, pepXMLTab, powerTCR, proBAMr, qpgraph, quantro, RBGL, rBiopaxParser, rcellminer, rCGH, REBET, rfaRm, RGraph2js, Rgraphviz, rgsepd, riboSeqR, ROntoTools, ropls, ROSeq, RTN, RTNduals, RTNsurvival, rTRM, sangerseqR, SANTA, sarks, SCArray, scDataviz, scLANE, scp, screenCounter, scry, segmentSeq, seqPattern, SICtools, sigFeature, sigsquared, SIMAT, similaRpeak, SIMLR, singleCellTK, SingleR, slingshot, SNPRelate, SparseSignatures, specL, STATegRa, STRINGdb, SUITOR, systemPipeTools, TCC, TFEA.ChIP, TIN, transcriptogramer, traseR, TreeAndLeaf, tripr, tRNAdbImport, TRONCO, Uniquorn, variancePartition, VERSO, XAItest, xcore, ENCODExplorerData, geneplast.data, ConnectivityMap, FieldEffectCrc, grndata, HarmanData, healthyControlsPresenceChecker, microRNAome, RegParallel, scMultiome, sesameData, xcoredata, adjclust, aroma.affymetrix, ggpicrust2, gkmSVM, GSEMA, inDAGO, MarZIC, NutrienTrackeR, pagoda2, Platypus, polyRAD, Rediscover, Seurat |
, Laurent Gatto [ctb]