DuoClustering2018
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see DuoClustering2018.
Data, Clustering Results and Visualization Functions From Duò et al (2018)
Bioconductor version: 3.12
Preprocessed experimental and simulated scRNA-seq data sets used for evaluation of clustering methods for scRNA-seq data in Duò et al (2018). Also contains results from applying several clustering methods to each of the data sets, and functions for plotting method performance.
Author: Angelo Duò, Charlotte Soneson
Maintainer: Angelo Duò <angelo.duo at icloud.com>
citation("DuoClustering2018")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DuoClustering2018")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DuoClustering2018")| Apply clustering method | HTML | R Script |
| Plot performance summaries | HTML | R Script |
| Visualize data sets and clustering results with iSEE | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, SingleCellData |
| Version | 1.8.0 |
| License | GPL (>=2) |
| Depends | |
| Imports | ExperimentHub, utils, magrittr, dplyr, tidyr, mclust, ggplot2, purrr, reshape2, viridis, ggthemes, stats, methods |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, BiocStyle, iSEE, scater, SingleCellExperiment, SummarizedExperiment, plyr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | corral, scry |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DuoClustering2018_1.8.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/DuoClustering2018 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DuoClustering2018 |
| Package Short Url | https://bioconductor.org/packages/DuoClustering2018/ |
| Package Downloads Report | Download Stats |