Imetagene
This package is for version 3.12 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Imetagene.
A graphical interface for the metagene package
Bioconductor version: 3.12
This package provide a graphical user interface to the metagene package. This will allow people with minimal R experience to easily complete metagene analysis.
Author: Audrey Lemacon <audrey.lemacon.1 at ulaval.ca>, Charles Joly Beauparlant <charles.joly-beauparlant at crchul.ulaval.ca>, Arnaud Droit <arnaud.droit at crchuq.ulaval.ca>
Maintainer: Audrey Lemacon <audrey.lemacon.1 at ulaval.ca>
citation("Imetagene")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Imetagene")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Imetagene")| Presentation of Imetagene | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Alignment, ChIPSeq, Coverage, Genetics, MultipleComparison, Sequencing, Software |
| Version | 1.19.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | Artistic-2.0 | file LICENSE |
| Depends | R (>= 3.2.0), metagene, shiny |
| Imports | d3heatmap, shinyBS, shinyFiles, shinythemes, ggplot2 |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/andronekomimi/Imetagene/issues |
See More
| Suggests | knitr, BiocStyle, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Imetagene_1.19.0.tar.gz |
| Windows Binary | Imetagene_1.19.0.zip |
| macOS 10.13 (High Sierra) | Imetagene_1.19.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Imetagene |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Imetagene |
| Bioc Package Browser | https://code.bioconductor.org/browse/Imetagene/ |
| Package Short Url | https://bioconductor.org/packages/Imetagene/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |