ComplexHeatmap
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see ComplexHeatmap.
Make Complex Heatmaps
Bioconductor version: 3.12
Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu at dkfz.de>
citation("ComplexHeatmap")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ComplexHeatmap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ComplexHeatmap")| complex_heatmap.html | HTML | |
| Interactive ComplexHeatmap | HTML | R Script |
| Most probably asked questions | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Sequencing, Software, Visualization |
| Version | 2.6.2 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.1.2), methods, grid, graphics, stats, grDevices |
| Imports | circlize (>= 0.4.5), GetoptLong, colorspace, clue, RColorBrewer, GlobalOptions (>= 0.1.0), parallel, png, Cairo, digest, S4Vectors(>= 0.26.1), IRanges, matrixStats |
| System Requirements | |
| URL | https://github.com/jokergoo/ComplexHeatmap https://jokergoo.github.io/ComplexHeatmap-reference/book/ |
See More
| Suggests | testthat (>= 1.0.0), knitr, markdown, dendsort, jpeg, tiff, fastcluster, dendextend (>= 1.0.1), grImport, grImport2, glue, GenomicRanges, gridtext, pheatmap (>= 1.0.12), shiny |
| Linking To | |
| Enhances | |
| Depends On Me | AMARETTO, EnrichedHeatmap, recoup |
| Imports Me | artMS, BiocOncoTK, blacksheepr, CATALYST, celda, CeTF, COCOA, cola, DEComplexDisease, DEGreport, DEP, diffcyt, ELMER, fCCAC, GeneTonic, gmoviz, ImpulseDE2, iSEE, LineagePulse, MesKit, MOMA, muscat, MWASTools, PathoStat, PeacoQC, pipeComp, POMA, profileplyr, SEtools, simplifyEnrichment, singleCellTK, TBSignatureProfiler, TCGAWorkflow, Xeva, YAPSA |
| Suggests Me | ALPS, bambu, BrainSABER, clustifyr, CNVRanger, dittoSeq, EnrichmentBrowser, gtrellis, HilbertCurve, msImpute, NanoporeRNASeq, projectR, TCGAbiolinks, TCGAutils, TimeSeriesExperiment, weitrix |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ComplexHeatmap_2.6.2.tar.gz |
| Windows Binary | ComplexHeatmap_2.6.2.zip |
| macOS 10.13 (High Sierra) | ComplexHeatmap_2.6.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ComplexHeatmap |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ComplexHeatmap |
| Bioc Package Browser | https://code.bioconductor.org/browse/ComplexHeatmap/ |
| Package Short Url | https://bioconductor.org/packages/ComplexHeatmap/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |