ABarray
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see ABarray.
Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.
Bioconductor version: 3.12
Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray (AB1700) data format. Functions include data preprocessing, filtering, control probe analysis, statistical analysis in one single function. A GUI interface is also provided. The raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.
Author: Yongming Andrew Sun
Maintainer: Yongming Andrew Sun <sunya at appliedbiosystems.com>
citation("ABarray")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ABarray")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ABarray")| ABarray gene expression | |
| ABarray gene expression GUI interface | |
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, Preprocessing, Software |
| Version | 1.58.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) (17.5 years) |
| License | GPL |
| Depends | |
| Imports | Biobase, graphics, grDevices, methods, multtest, stats, tcltk, utils |
| System Requirements | |
| URL |
See More
| Suggests | limma, LPE |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ABarray_1.58.0.tar.gz |
| Windows Binary | ABarray_1.58.0.zip |
| macOS 10.13 (High Sierra) | ABarray_1.58.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ABarray |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ABarray |
| Bioc Package Browser | https://code.bioconductor.org/browse/ABarray/ |
| Package Short Url | https://bioconductor.org/packages/ABarray/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.12 | Source Archive |