############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data spicyWorkflow ### ############################################################################## ############################################################################## * checking for file ‘spicyWorkflow/DESCRIPTION’ ... OK * preparing ‘spicyWorkflow’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘spicyWorkflow.Rmd’ using rmarkdown Quitting from spicyWorkflow.Rmd:774-791 [unnamed-chunk-40] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `rowMeans()`: ! 'x' must be an array of at least two dimensions --- Backtrace: ▆ 1. └─treekoR::getClusterTree(...) 2. └─treekoR::runHOPACH(...) 3. └─hopach::hopach(data, K = K, dmat = dist, kmax = kmax) 4. └─hopach::mssrundown(...) 5. └─hopach::mssnextlevel(...) 6. └─base::rowMeans(dmat[labels == ordlabels[j], labels == labels[medoid2]]) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'spicyWorkflow.Rmd' failed with diagnostics: 'x' must be an array of at least two dimensions --- failed re-building ‘spicyWorkflow.Rmd’ SUMMARY: processing the following file failed: ‘spicyWorkflow.Rmd’ Error: Vignette re-building failed. Execution halted