############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rsamtools ### ############################################################################## ############################################################################## * checking for file ‘Rsamtools/DESCRIPTION’ ... OK * preparing ‘Rsamtools’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Rsamtools-Overview.Rmd’ using rmarkdown Quitting from Rsamtools-Overview.Rmd:303-315 [txdb-transcripts] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! package 'GenomicFeatures' required by 'TxDb.Hsapiens.UCSC.hg18.knownGene' could not be found --- Backtrace: ▆ 1. └─base::library(TxDb.Hsapiens.UCSC.hg18.knownGene) 2. └─base::.getRequiredPackages2(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Rsamtools-Overview.Rmd' failed with diagnostics: package 'GenomicFeatures' required by 'TxDb.Hsapiens.UCSC.hg18.knownGene' could not be found --- failed re-building ‘Rsamtools-Overview.Rmd’ SUMMARY: processing the following file failed: ‘Rsamtools-Overview.Rmd’ Error: Vignette re-building failed. Execution halted