############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data GSVA ### ############################################################################## ############################################################################## * checking for file ‘GSVA/DESCRIPTION’ ... OK * preparing ‘GSVA’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘GSVA.Rmd’ using rmarkdown --- finished re-building ‘GSVA.Rmd’ --- re-building ‘GSVA_scRNAseq.Rmd’ using rmarkdown Quitting from GSVA_scRNAseq.Rmd:90-96 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! package or namespace load failed for 'TENxPBMCData' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): there is no package called 'ExperimentHub' --- Backtrace: ▆ 1. └─base::library(TENxPBMCData) 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'GSVA_scRNAseq.Rmd' failed with diagnostics: package or namespace load failed for 'TENxPBMCData' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): there is no package called 'ExperimentHub' --- failed re-building ‘GSVA_scRNAseq.Rmd’ SUMMARY: processing the following file failed: ‘GSVA_scRNAseq.Rmd’ Error: Vignette re-building failed. Execution halted