############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD check --install=check:spatialFDA.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings spatialFDA_1.1.21.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.22-bioc/meat/spatialFDA.Rcheck’ * using R version 4.5.0 (2025-04-11) * using platform: aarch64-unknown-linux-gnu * R was compiled by aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0 GNU Fortran (GCC) 14.2.0 * running under: openEuler 24.03 (LTS) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘spatialFDA/DESCRIPTION’ ... OK * this is package ‘spatialFDA’ version ‘1.1.21’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘spatialFDA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed crossSpatialInference 29.055 0.472 35.120 extractCrossInferenceData 29.082 0.338 34.221 plotCrossHeatmap 28.589 0.597 32.996 calcCrossMetricPerFov 27.345 1.704 36.009 plotCrossMetricPerFov 28.027 0.529 36.578 plotMdl 13.086 0.338 19.284 functionalGam 12.652 0.282 17.957 spatialInference 12.396 0.179 17.032 plotMetricPerFov 10.539 0.242 14.548 plotFpca 10.232 0.338 16.308 prepData 10.140 0.329 16.027 functionalPCA 10.142 0.326 14.619 plotFbPlot 10.124 0.282 14.503 calcMetricPerFov 9.817 0.326 16.069 print.fpca 9.745 0.299 14.248 rMaxHeuristic 7.652 0.287 14.427 dot-dfToppp 7.294 0.283 12.044 dot-extractMetric 7.012 0.230 11.779 dot-speToDf 6.893 0.180 11.700 dot-loadExample 6.219 0.164 10.383 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK