##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r paxtoolsr -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data paxtoolsr
###
##############################################################################
##############################################################################


* checking for file 'paxtoolsr/DESCRIPTION' ... OK
* preparing 'paxtoolsr':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'using_paxtoolsr.Rmd' using rmarkdown
2025-08-14 21:11:21,265 955  [main] INFO  org.biopax.paxtools.PaxtoolsMain  - toSif: not blacklisting ubiquitous molecules (no blacklist.txt found)
2025-08-14 21:11:22,377 2067 [main] INFO  org.biopax.paxtools.PaxtoolsMain  - toSifnx: not blacklisting ubiquitous molecules (no blacklist.txt found)

Quitting from using_paxtoolsr.Rmd:168-171 [searchResultsExampleVerbose]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `getPcRequest()`:
! ERROR: Code: 404 Message: Unknown Error (PC Webservice Error)
---
Backtrace:
    ▆
 1. └─paxtoolsr::searchPc(q = "glycolysis", type = "pathway", verbose = TRUE)
 2.   └─paxtoolsr:::getPcRequest(url, verbose)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'using_paxtoolsr.Rmd' failed with diagnostics:
ERROR: Code: 404 Message: Unknown Error (PC Webservice Error)
--- failed re-building 'using_paxtoolsr.Rmd'

SUMMARY: processing the following file failed:
  'using_paxtoolsr.Rmd'

Error: Vignette re-building failed.
Execution halted