##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pareg
###
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* checking for file ‘pareg/DESCRIPTION’ ... OK
* preparing ‘pareg’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘pareg.Rmd’ using rmarkdown
2025-08-12 05:48:39.337 R[41444:290581296] XType: Using static font registry.
Channels:
 - anaconda
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.20.0/pareg/1.12.0/pareg

  added / updated specs:
    - python=3.12.8


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    ca-certificates-2025.7.15  |       hca03da5_0         135 KB  anaconda
    ------------------------------------------------------------
                                           Total:         135 KB

The following NEW packages will be INSTALLED:

  bzip2              anaconda/osx-arm64::bzip2-1.0.8-h80987f9_6 
  ca-certificates    anaconda/osx-arm64::ca-certificates-2025.7.15-hca03da5_0 
  expat              anaconda/osx-arm64::expat-2.7.1-h313beb8_0 
  libcxx             anaconda/osx-arm64::libcxx-17.0.6-he5c5206_4 
  libffi             anaconda/osx-arm64::libffi-3.4.4-hca03da5_1 
  ncurses            anaconda/osx-arm64::ncurses-6.5-hee39554_0 
  openssl            anaconda/osx-arm64::openssl-3.0.17-h4ee41c1_0 
  pip                anaconda/noarch::pip-25.1-pyhc872135_2 
  python             anaconda/osx-arm64::python-3.12.8-h99e199e_0 
  readline           anaconda/osx-arm64::readline-8.3-h0b18652_0 
  setuptools         anaconda/osx-arm64::setuptools-78.1.1-py312hca03da5_0 
  sqlite             anaconda/osx-arm64::sqlite-3.50.2-h79febb2_1 
  tk                 anaconda/osx-arm64::tk-8.6.14-h6ba3021_1 
  tzdata             anaconda/noarch::tzdata-2025b-h04d1e81_0 
  wheel              anaconda/osx-arm64::wheel-0.45.1-py312hca03da5_0 
  xz                 anaconda/osx-arm64::xz-5.6.4-h80987f9_1 
  zlib               anaconda/osx-arm64::zlib-1.2.13-h18a0788_1 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - anaconda
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

# All requested packages already installed.

Channels:
 - anaconda
Platform: osx-arm64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed

LibMambaUnsatisfiableError: Encountered problems while solving:
  - package tensorflow-base-2.10.0-eigen_py38h4111cb8_0 requires python >=3.8,<3.9.0a0, but none of the providers can be installed

Could not solve for environment specs
The following packages are incompatible
├─ python 3.12.8**  is requested and can be installed;
└─ tensorflow 2.10.0**  is not installable because there are no viable options
   ├─ tensorflow 2.10.0 would require
   │  └─ tensorflow-base 2.10.0 eigen_py38h4111cb8_0, which requires
   │     └─ python >=3.8,<3.9.0a0 , which conflicts with any installable versions previously reported;
   ├─ tensorflow 2.10.0 would require
   │  └─ tensorflow-base 2.10.0 eigen_py310h4111cb8_0, which requires
   │     └─ python >=3.10,<3.11.0a0 , which conflicts with any installable versions previously reported;
   └─ tensorflow 2.10.0 would require
      └─ tensorflow-base 2.10.0 eigen_py39h4111cb8_0, which requires
         └─ python >=3.9,<3.10.0a0 , which conflicts with any installable versions previously reported.


Quitting from pareg.Rmd:144-150 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! one or more Python packages failed to install [error code 1]
---
Backtrace:
    ▆
 1. └─pareg::pareg(...)
 2.   └─basilisk::basiliskStart(...)
 3.     └─basilisk::obtainEnvironmentPath(env)
 4.       └─basilisk::setupBasiliskEnv(...)
 5.         └─reticulate::conda_install(...)
 6.           └─reticulate:::stopf(fmt, result)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'pareg.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 1]
--- failed re-building ‘pareg.Rmd’

--- re-building ‘pathway_similarities.Rmd’ using rmarkdown
--- finished re-building ‘pathway_similarities.Rmd’

SUMMARY: processing the following file failed:
  ‘pareg.Rmd’

Error: Vignette re-building failed.
Execution halted