############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data mogsa ### ############################################################################## ############################################################################## * checking for file ‘mogsa/DESCRIPTION’ ... OK * preparing ‘mogsa’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘moCluster-knitr.Rnw’ using knitr --- finished re-building ‘moCluster-knitr.Rnw’ --- re-building ‘mogsa-knitr.Rnw’ using knitr Warning: 'mode(width)' differs between new and previous ==> NOT changing 'width' Warning: 'mode(width)' differs between new and previous ==> NOT changing 'width' Quitting from mogsa-knitr.Rnw:277-282 [prepGraphite] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `fetchRemote()`: ! cannot download pathway data: are you offline? --- Backtrace: x 1. +-mogsa::prepGraphite(...) 2. \-graphite::pathways("hsapiens", "kegg") 3. \-graphite:::loadData(paste(species, database, sep = "-")) 4. \-graphite:::withArchiveDir(...) 5. \-graphite (local) func(path) 6. \-graphite:::fetchRemote(name, path) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'mogsa-knitr.Rnw' failed with diagnostics: cannot download pathway data: are you offline? --- failed re-building ‘mogsa-knitr.Rnw’ SUMMARY: processing the following file failed: ‘mogsa-knitr.Rnw’ Error: Vignette re-building failed. Execution halted